PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.9424s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 259aa MW: 29043.7 Da PI: 10.0003

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.9424s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.1	2.2e-33	5	84	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+k + kewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++elvg+kktLvfy+grap+gekt+Wvmheyrl Araha.9424s0001.1.p 5 KAKMGGKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNStTSELVGMKKTLVFYRGRAPRGEKTSWVMHEYRL 84 5667889***********************************9878889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	42.858	1	106	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-39	2	106	IPR003441	NAC domain
Pfam	PF02365	5.2E-16	12	84	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MLIEKAKMGG KEWYFFSLRD RKYPTGVRTN RATNTGYWKT TGKDKEIFNS TTSELVGMKK 60 TLVFYRGRAP RGEKTSWVMH EYRLHSKSSY RTSKQDEWVV CRVFKKTEAT KKYISSSSSS 120 TSHHHNHNHT RASILSSTNN NNTNYSSDLL QLPPHLQPHP SLNINQSLMA NAVHLAELSR 180 VFRASTSTNM DSAHQQLMNY THMPVSGLSL NLGGALVQPP PVVSLEDVAA VSASFNGENG 240 FGNVMSQCMD LDGYWPSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-36	1	112	61	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-36	1	112	61	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-36	1	112	61	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-36	1	112	61	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-36	1	112	64	174	NAC domain-containing protein 19
3swm_B	2e-36	1	112	64	174	NAC domain-containing protein 19
3swm_C	2e-36	1	112	64	174	NAC domain-containing protein 19
3swm_D	2e-36	1	112	64	174	NAC domain-containing protein 19
3swp_A	2e-36	1	112	64	174	NAC domain-containing protein 19
3swp_B	2e-36	1	112	64	174	NAC domain-containing protein 19
3swp_C	2e-36	1	112	64	174	NAC domain-containing protein 19
3swp_D	2e-36	1	112	64	174	NAC domain-containing protein 19
4dul_A	1e-36	1	112	61	171	NAC domain-containing protein 19
4dul_B	1e-36	1	112	61	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.9424s0001.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006403	0.0	AC006403.4 Arabidopsis thaliana chromosome 2 clone T28I24 map mi238, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006296338.1	1e-173	protein CUP-SHAPED COTYLEDON 1
Swissprot	Q9S851	1e-51	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	R0G1T7	1e-171	R0G1T7_9BRAS; Uncharacterized protein
STRING	Cagra.4091s0015.1.p	1e-172	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6851	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-149	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Araha.9424s0001.1.p

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]