PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.71287s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 319aa    MW: 35616.1 Da    PI: 5.4549
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.71287s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.72.4e-08245340
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                          e +C+ +e +++ ++C+++   lC +C +++H+       Ht++
  Araha.71287s0001.1.p  2 EARCDYCETEKALIYCKSDLAKLCLNCDVNIHSAnplsqrHTRT 45
                          579******99*********************668888889876 PP
2CCT60.84.5e-21264307144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R++a++RYk+K+++R F K+irY+sRKa+A++R+RvKGrFvk+ 
  Araha.71287s0001.1.p 264 RDEAKKRYKQKKSKRMFGKQIRYASRKARADTRKRVKGRFVKSG 307
                           99***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
PfamPF006432.8E-6345IPR000315B-box-type zinc finger
CDDcd000211.36E-6447No hitNo description
PROSITE profilePS5101714.436264306IPR010402CCT domain
PfamPF062033.1E-16264306IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEARCDYCET EKALIYCKSD LAKLCLNCDV NIHSANPLSQ RHTRTLLCEK CFLQPTVIHC  60
MNEKVSLCQG CQWTASNCTG LGHRLQNLNP YSGCPSPSDF AKIWSSILEP SVSNWVSPFS  120
DTLLQELDDW NGSSTSVITQ NQNLKDYSSF FSMESNLPKV IEEECSGLDL CEGINLDDAP  180
LNFNASNDII GCSSLDHIKG YQYEDSFKEE NDIGLPSLLL PALSGNVVPS SATDYQDCGI  240
SPGFLIGDSP WESNVEVSFN PKSRDEAKKR YKQKKSKRMF GKQIRYASRK ARADTRKRVK  300
GRFVKSGETF EYDPSLVM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.71287s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615410.0AL161541.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 41.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973380.0Z97338.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868216.10.0putative zinc finger protein CONSTANS-LIKE 11
RefseqXP_020872286.10.0putative zinc finger protein CONSTANS-LIKE 11
SwissprotO233790.0COL11_ARATH; Putative zinc finger protein CONSTANS-LIKE 11
TrEMBLD7MAK30.0D7MAK3_ARALL; Zinc finger (B-box type) family protein
STRINGfgenesh1_pm.C_scaffold_70022100.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15250.10.0B-box type zinc finger protein with CCT domain