PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.27603s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

SRS

Protein Properties

Length: 344aa MW: 38268.7 Da PI: 7.0372

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.27603s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	228.5	1.2e-70	116	282	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...........k 79 r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s++++++kr re + Araha.27603s0001.1.p 116 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRETQNAKRLREAsggdnnddkdhS 204 7899********************************************************999977777777766666666666557 PP DUF702 80 skkqsalsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 sal++t++++a+s++ le+s+ lP+ev+s+avfrcvrvss+++ +++e+aYqtav+igGhvfkGiLydqG+++ Araha.27603s0001.1.p 205 GGGGSALANTRVVNANSNSGLEVSQhLPPEVNSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 282 778899**********998876***************98535567*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.1E-64	119	281	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.0E-28	121	163	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.5E-26	230	280	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MAGFFYLGGR DNNNKQDHHQ VDKDHHHQDK SNYLYLYKDE IYNNNKGFEI WPPQYFQQQE 60 HQQQQQQQQH ATAPANFYSF GMVPSGSSSN NNNNRSRSLY FNVVSDHEPG GFTVTRQGGM 120 NCQDCGNQAK KDCPHMRCRT CCKSRGFHCQ THVKSTWVPA AKRRERLAQL ASLQHHSASS 180 RETQNAKRLR EASGGDNNDD KDHSGGGGSA LANTRVVNAN SNSGLEVSQH LPPEVNSPAV 240 FRCVRVSSIE EDEDDQEYAY QTAVNIGGHV FKGILYDQGP DQDHNHHLNL LASTATTTNV 300 EETATKTVTG NNNNGLMLDP SSLYPAQLNS FIAGTPFFTP PRS*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MAGFFYLGGR DNNNKQDHHQ VDKDHHHQDK SNYLYLYKDE IYNNNKGFEI WPPQYFQQQE  60
HQQQQQQQQH ATAPANFYSF GMVPSGSSSN NNNNRSRSLY FNVVSDHEPG GFTVTRQGGM  120
NCQDCGNQAK KDCPHMRCRT CCKSRGFHCQ THVKSTWVPA AKRRERLAQL ASLQHHSASS  180
RETQNAKRLR EASGGDNNDD KDHSGGGGSA LANTRVVNAN SNSGLEVSQH LPPEVNSPAV  240
FRCVRVSSIE EDEDDQEYAY QTAVNIGGHV FKGILYDQGP DQDHNHHLNL LASTATTTNV  300
EETATKTVTG NNNNGLMLDP SSLYPAQLNS FIAGTPFFTP PRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.27603s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY800620	0.0	AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBank	AY924730	0.0	AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_177684.1	0.0	SHI-related sequence 5
Swissprot	Q9LQZ5	0.0	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A178W9B5	0.0	A0A178W9B5_ARATH; SRS5
STRING	AT1G75520.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	0.0	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Araha.27603s0001.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]