PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.24257s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SRS
Protein Properties Length: 271aa    MW: 29325.3 Da    PI: 6.2747
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.24257s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702224.71.8e-69862412154
                DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsal 86 
                           rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s     +     ++ +kr+r++  +   ++
  Araha.24257s0002.1.p  86 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSgsgaGSSIPKRHRDT--TLPGTS 172
                           67899*****************************************************99887766665577778888876..888899 PP

                DUF702  87 sstklssaeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                           ss++l+s ++  e+  +s+P evss+a+frcv++s+vdd g+ ++aYqt+v+igGh+fkGiLydqG+e+
  Araha.24257s0002.1.p 173 SSSRLPSDSAGLEMGEASFPGEVSSDALFRCVKMSGVDDgGDGQYAYQTTVNIGGHLFKGILYDQGPES 241
                           999************************************8899************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.0E-6289240IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.5E-2791133IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.7E-29191239IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAGIFSLGGN NNGDEEEENQ QQQKTNWVWY RSNANTNNTN PSSSQQVWQI PPEQMLMHHH  60
PHPQQQSLDL YPGHQIDVSD LATSSRSITI SCRDCGNQAK KDCTHMRCRT CCKSRGFDCS  120
THVRSTWIPV ARRRERQQQL HMSTSGGGGG SGSGAGSSIP KRHRDTTLPG TSSSSRLPSD  180
SAGLEMGEAS FPGEVSSDAL FRCVKMSGVD DGGDGQYAYQ TTVNIGGHLF KGILYDQGPE  240
SSYMSGGSGG SDHQSSXXXE EEEISLILPL *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.24257s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0221410.0AL022141.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E13 (ESSAII project).
GenBankAL1615890.0AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284108.11e-144protein SHI RELATED SEQUENCE 2
SwissprotO655171e-139SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBLR0F6A61e-143R0F6A6_9BRAS; Uncharacterized protein
STRINGCagra.3784s0003.1.p1e-151(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136481727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.11e-110Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]