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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.23747s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ARF | ||||||||
Protein Properties | Length: 814aa MW: 90220.2 Da PI: 6.3085 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.4 | 1.2e-22 | 126 | 226 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae+ ++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Araha.23747s0001.1.p 126 FCKTLTASDTSTHGGFSVPRRAAEKVfppldyTLQPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI 213 99*****************************9666655.49************************************************ PP E-SSSEE..EEEEE- CS B3 84 ldgrsefelvvkvfr 98 ++++ +l+++++ Araha.23747s0001.1.p 214 --RNEKNQLFLGIRH 226 ..5678888998876 PP | |||||||
2 | Auxin_resp | 110.7 | 1.5e-36 | 252 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +t+s F+v+++Pras+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k Araha.23747s0001.1.p 252 AAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 335 799******************************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.85E-48 | 112 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-39 | 119 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.66E-21 | 125 | 221 | No hit | No description |
SMART | SM01019 | 2.8E-22 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-20 | 126 | 226 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.012 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.2E-32 | 252 | 335 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.88E-7 | 701 | 781 | No hit | No description |
Pfam | PF02309 | 6.2E-8 | 703 | 792 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.8 | 707 | 791 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 814 aa Download sequence Send to blast |
MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV 60 DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP LTPEEQKETF VPIELGIPSK 120 QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH 180 IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS 240 SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML 300 FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT 360 FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG GGEQQGLLPL NYPSVGLFPW 420 MQQRLDLTQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHQQYL QQSASHNSDL 480 MLQQQQHQQA RHLMHAQTQI MSENLSQQNM RQEVSNQPAG QQQLQQPDQN AYLNAFKMQN 540 GHLQQWQHSE MPSPSFMKSD FPDSSNKFAT TASPMQQNSA SPASGDGSNL LNFSITGQSV 600 LPEQLTTEGW SPKASNTFSE PLSLPQAYPG KSLALEPGNP SLFGVDPDSG LFLPSTVPRF 660 ASSSGDAEAS PMSLTDSGFQ NSLFGCMQDT HELLHGAGQI NPSTQTKNFV KVYKSGSVGR 720 SLDISRFSSY HELREELGKM FAIEGLLEDP LRSGWQLVFV DKENDILLLG DDPWESFVNN 780 VWYIKILSPE DVQQMGDHGE GSGGSFPQNP THL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-153 | 8 | 356 | 40 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.23747s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF042196 | 0.0 | AF042196.1 Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020873073.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | R0GF16 | 0.0 | R0GF16_9BRAS; Auxin response factor | ||||
STRING | XP_010450468.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1344 | 28 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | Araha.23747s0001.1.p |