PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.23363s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 403aa    MW: 45933.5 Da    PI: 5.4045
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.23363s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41e-061457340
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                          +r C+ + + +++++C   + +lC+ C  + H+       H++v
  Araha.23363s0006.1.p 14 ARACDSCVKRRARWYCSAGDAFLCHACDGSVHSAnplarrHERV 57
                          578*****************************657888888876 PP
2CCT57.93.7e-20362399138
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKG 38 
                           Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KG
  Araha.23363s0006.1.p 362 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKG 399
                           9************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.2811259IPR000315B-box-type zinc finger
SMARTSM003361.7E-71259IPR000315B-box-type zinc finger
CDDcd000212.55E-71559No hitNo description
PfamPF062035.4E-15362399IPR010402CCT domain
PROSITE profilePS5101713.791362402IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MMKSLASAVG GKTARACDSC VKRRARWYCS AGDAFLCHAC DGSVHSANPL ARRHERVRLK  60
SASSGKHRHA SSSSPSHQST WHQGFTRKAR TPRGGKKSHT MVFHDLVPEM STEDQAESYE  120
VEEQLIFEVP VMNPMVEEHC FNQSVETKVE FPMMPLSFKC SDEEDEDNAE SCLNGLFPTD  180
MELAQFTADV ETLLGGGMER EFHSIEELGL GEVLKIEKEE VEEEEVVVTR EVFDLDEAEE  240
TSPFEISFDY EFAHKTTYEE EEEEDKKEDV MKNRMDVVVN EMSGRIKEEK KEKALMLRLD  300
YESVISTWKG QGIPWTDREP SEIDLDMVCC PTHSLGESGE AHHHTHFRGL GLHMGEAGDG  360
GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGS QK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372388RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.23363s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0546250.0AY054625.1 Arabidopsis thaliana putative B-box zinc finger protein (At1g68520; T26J14.9) mRNA, complete cds.
GenBankAY0815410.0AY081541.1 Arabidopsis thaliana putative B-box zinc finger protein (At1g68520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888669.10.0zinc finger protein CONSTANS-LIKE 6
SwissprotQ8LG760.0COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6
TrEMBLD7KWD20.0D7KWD2_ARALL; Zinc finger (B-box type) family protein
STRINGscaffold_201694.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]