PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1835s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SRS
Protein Properties Length: 351aa    MW: 38395.9 Da    PI: 6.5009
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1835s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702226.93.7e-701172792154
               DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel....ks 80 
                          r+g+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWv+aakrrerq+qla + +k+ ++a       ++++ +++r+     ++
  Araha.1835s0003.1.p 117 RQGNMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPAKRIRDAnssgggdDDDDREDERNGggddSC 206
                          7899*****************************************************999998887677776533334444433677689 PP

               DUF702  81 kkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                             sal++t++++ +s+  le s+lP+e+ss+avfrc+rvss+dd+eee+aYqtavsigGhvfkGiLydqG+++
  Araha.1835s0003.1.p 207 GGGSALACTRVVNVNSS-GLESSHLPPEISSPAVFRCMRVSSIDDEEEEYAYQTAVSIGGHVFKGILYDQGPSD 279
                          999*********99876.999999***********************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.0E-63120278IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.2E-27122164IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.2E-27229277IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAGLFYLGGR DHNKQDHHQD KDHNEDKSNN YLYLYKDEIY NNNKGFEIFP PQYFQQQQQQ  60
QQLNHVAAPT NLYSFGMVPS GGININNNRS TNRSLYFNVV SDHEPVRSST GGFTVTRQGN  120
MNCQDCGNQA KKDCPHMRCR TCCKSRGFDC QTHVKSTWVS AAKRRERQAQ LAVLPAKRIR  180
DANSSGGGDD DDDREDERNG GGDDSCGGGS ALACTRVVNV NSSGLESSHL PPEISSPAVF  240
RCMRVSSIDD EEEEYAYQTA VSIGGHVFKG ILYDQGPSDH HRYSSNLNAE TSQHHLNLMD  300
STASAATTTA VTAVNSNNGS IDPSSIYTAV AAPFNAYVAA GTSFFAPPRS *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00152DAPTransfer from AT1G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1835s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9246760.0AY924676.1 Arabidopsis thaliana hypothetical protein (At1g19790) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867750.10.0protein SHI RELATED SEQUENCE 7
RefseqXP_020867751.10.0protein SHI RELATED SEQUENCE 7
RefseqXP_020867752.10.0protein SHI RELATED SEQUENCE 7
SwissprotQ9FXH70.0SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBLD7KI570.0D7KI57_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2159__AT1G19790.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.21e-166SHI-related sequence 7
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]