PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.Z5H58

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 335aa MW: 37683.3 Da PI: 7.1125

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.Z5H58	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.1	1.2e-51	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrF Ptdeel+v+yL++kv+g++++l +i+e+d+yk++Pw Lp k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g+ Aradu.Z5H58 14 LPPGFRFYPTDEELLVQYLCRKVAGNHFSL-PIIAEIDLYKFDPWILPGKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITT-EGR 109 79************************99.88***********7767799*********************************99.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy g+apkg+kt+W+mheyrl Aradu.Z5H58 110 KVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139 **************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-65	10	164	IPR003441	NAC domain
PROSITE profile	PS51005	60.089	14	163	IPR003441	NAC domain
Pfam	PF02365	1.8E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MGVPEKDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGNH FSLPIIAEID LYKFDPWILP 60 GKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITTEGRK VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLL NGSQKSLGST KLDDWVLCRI YKKNLSSSQK VNMPSFTSKE 180 WSNGSSPSSS SHIDDMLELP EIDDRCFALP RVNSLQHEEK LTLGATGNNF PDWVNSGGLD 240 SVPEFGSQTQ GMTSYDGNDL YVPSASQFCH VNTMVVPGNP TEEEVQSGIR TQRIDENFGL 300 FQQNSNVFTH RYLSSSGDSF GFGYPNQQFG FGFRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-103	1	170	7	174	NAC domain-containing protein 19
3swm_B	1e-103	1	170	7	174	NAC domain-containing protein 19
3swm_C	1e-103	1	170	7	174	NAC domain-containing protein 19
3swm_D	1e-103	1	170	7	174	NAC domain-containing protein 19
3swp_A	1e-103	1	170	7	174	NAC domain-containing protein 19
3swp_B	1e-103	1	170	7	174	NAC domain-containing protein 19
3swp_C	1e-103	1	170	7	174	NAC domain-containing protein 19
3swp_D	1e-103	1	170	7	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.Z5H58

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU755022	0.0	EU755022.1 Arachis hypogaea cultivar Yueyou 7 NAC-like transcription factor (NAC3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015953913.1	0.0	NAC domain-containing protein 72 isoform X2
Swissprot	A0A3Q7HH64	1e-131	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A445DYM6	0.0	A0A445DYM6_ARAHY; Uncharacterized protein
STRING	GLYMA12G22880.1	1e-160	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4429	33	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-117	NAC family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]