PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.YRC2R

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Nin-like

Protein Properties

Length: 986aa MW: 109466 Da PI: 5.5329

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.YRC2R	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.5	1.3e-28	583	634	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek isle+l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Aradu.YRC2R 583 AEKMISLEVLQRYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 634 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.325	573	654	IPR003035	RWP-RK domain
Pfam	PF02042	7.0E-26	587	634	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-24	890	976	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.3E-26	891	973	No hit	No description
PROSITE profile	PS51745	23.009	891	973	IPR000270	PB1 domain
SMART	SM00666	7.4E-25	891	973	IPR000270	PB1 domain
CDD	cd06407	1.74E-35	892	972	No hit	No description
Pfam	PF00564	7.9E-19	892	972	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 986 aa Download sequence Send to blast
MPDSCEEKSE LPSKSKPQEE HGFPMDFDIY LESSSWPMDH TPSASNPMSP FIITTSSEQP 60 FSPLWAFSDV EDDHRHVRVV AGDNTNTNTA IETENPVEND DNKKIVSPPF VPLPPIKIPD 120 GYCLIKERMT QALRHFKQLT EQNFLAQVWA PVRNGNRYAL TTSGQPFVLD PHSNGLHQYR 180 TVSLMYMFPV DGENDEILGL PGRVFQQKLP EWTPNVQYYT SREYSRRNHA QHYNVRGTLA 240 LPVFESPGQS CVGVLELIMT SEKVNYAPEV DKVCKALEAV NLRSSEILEH PFAQICNEGR 300 QNALAEILEI LTVVCETHNL PLAQTWVPCR HRSVLANGGG LKKSCSSFDG HCMGRVCMSA 360 SDVAFYVIDA HTWGFHDACA EHHLQQGQGV AGRAFLSHNM SFCGNITQFC KTDYPLVHYA 420 LMFGLTSCFA ICLQSSHTGS DDYVLEFFLP PSITNFYEQK DLLGSILATM KQNFQSLKVA 480 AGVELEEGCT IEVVEPINER IHLSLESVPV AQSAKSPPPT LNASLNKDDG VPQGPLEQQM 540 PAWLEDINDG GNLGDNAGGS MNPMTSLDAK IKKKPSERKR GKAEKMISLE VLQRYFSGSL 600 KDAAKSLGVC PTTMKRICRQ HGISRWPSRK INKVNRSLSK LKCVIESVRG AEGAFALNSV 660 NKDPLPIAAG SFTEPCTSKM FNRNASLSIQ PSKTRMNEND LDTSRVSETN RQVRMQDQLL 720 EGEQSPEKVI HEEGWSTQEV GTKDPEKFRN LSGSSEDSAN PHSHNSCHGS PPNEISPANI 780 FRPFNKEKSV PLGVSTESTM QPTNALNYAN AYTALNVERT EPQEPFGRML LEGVGSSKDL 840 RNLCPLEDQA LEACGVNPPC HDLAPKQCMM DTTLNSNNTM IPFAPKKEMK SVTIKATYKE 900 DIIRFRVFLN CGIVELQEEI SKRLKLEIGA FDIKYLDDDN EWVLISCDAD LQECMDVLTS 960 SGSNMIRLVV HDTVSILGSS CESSGN

Sequence ? help Back to Top

Protein Sequence Length: 986 aa Download sequence Send to blast

MPDSCEEKSE LPSKSKPQEE HGFPMDFDIY LESSSWPMDH TPSASNPMSP FIITTSSEQP  60
FSPLWAFSDV EDDHRHVRVV AGDNTNTNTA IETENPVEND DNKKIVSPPF VPLPPIKIPD  120
GYCLIKERMT QALRHFKQLT EQNFLAQVWA PVRNGNRYAL TTSGQPFVLD PHSNGLHQYR  180
TVSLMYMFPV DGENDEILGL PGRVFQQKLP EWTPNVQYYT SREYSRRNHA QHYNVRGTLA  240
LPVFESPGQS CVGVLELIMT SEKVNYAPEV DKVCKALEAV NLRSSEILEH PFAQICNEGR  300
QNALAEILEI LTVVCETHNL PLAQTWVPCR HRSVLANGGG LKKSCSSFDG HCMGRVCMSA  360
SDVAFYVIDA HTWGFHDACA EHHLQQGQGV AGRAFLSHNM SFCGNITQFC KTDYPLVHYA  420
LMFGLTSCFA ICLQSSHTGS DDYVLEFFLP PSITNFYEQK DLLGSILATM KQNFQSLKVA  480
AGVELEEGCT IEVVEPINER IHLSLESVPV AQSAKSPPPT LNASLNKDDG VPQGPLEQQM  540
PAWLEDINDG GNLGDNAGGS MNPMTSLDAK IKKKPSERKR GKAEKMISLE VLQRYFSGSL  600
KDAAKSLGVC PTTMKRICRQ HGISRWPSRK INKVNRSLSK LKCVIESVRG AEGAFALNSV  660
NKDPLPIAAG SFTEPCTSKM FNRNASLSIQ PSKTRMNEND LDTSRVSETN RQVRMQDQLL  720
EGEQSPEKVI HEEGWSTQEV GTKDPEKFRN LSGSSEDSAN PHSHNSCHGS PPNEISPANI  780
FRPFNKEKSV PLGVSTESTM QPTNALNYAN AYTALNVERT EPQEPFGRML LEGVGSSKDL  840
RNLCPLEDQA LEACGVNPPC HDLAPKQCMM DTTLNSNNTM IPFAPKKEMK SVTIKATYKE  900
DIIRFRVFLN CGIVELQEEI SKRLKLEIGA FDIKYLDDDN EWVLISCDAD LQECMDVLTS  960
SGSNMIRLVV HDTVSILGSS CESSGN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.YRC2R

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015967403.1	0.0	protein NLP6 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A445CZ02	0.0	A0A445CZ02_ARAHY; Uncharacterized protein
STRING	GLYMA09G25230.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]