PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.T4VLF

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Nin-like

Protein Properties

Length: 967aa MW: 107546 Da PI: 5.7104

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.T4VLF	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.6	1.2e-28	581	631	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Aradu.T4VLF 581 EKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 631 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.621	570	651	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-25	584	631	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.86E-23	870	958	No hit	No description
PROSITE profile	PS51745	25.983	873	955	IPR000270	PB1 domain
Pfam	PF00564	1.3E-18	873	954	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.6E-27	873	954	No hit	No description
SMART	SM00666	2.5E-26	873	955	IPR000270	PB1 domain
CDD	cd06407	2.78E-37	874	954	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence Send to blast
MSESEEDKTD FASLKSKEDQ QQSPPQLPPP SAMDFDLDLE TSWPLDHLSF VSNNPMSPFL 60 FPISSEQPSS PLWLFSDAED ERHNNTLASA PAFSDFHKIF SCDSNSVTEK PVENANDEDK 120 KLLPPIVAMP PLEILDRYCV IKERMTQALR YYKELTEQNV LAQVWAPVRN GNRFVLTTSG 180 QPFVLDPHSN GLHQYRTVSL MYVFSADGEK EESLGLPGRV YQQKVPEWTP DVQYYSTKEY 240 PRRDHAQHYN VRGTLALPVF EPSMQSCVGV LELIMTSQKI NYAPEVDKIC RALEAVNLKS 300 SEILGHQYTQ ICNEGRQNAL AEILEILTVV CETHNLPLAQ TWVPCRHRSV LAHGGGLKKS 360 CSSFDGSCMG KVCMSTTDIA FYIIDAHLWG FREACVEHHL QQGQGVAGRA FSSHSMSFCR 420 NITRFCKIDY PLVHYALMFG LTSSFSICLR SSHTGDDDYV LEFFLPPRIT DFNEQKALLG 480 SILTIMKQHF QSLKIASGVE LEQNALVETI EATIEGVHLR FESIPVRQDA SPNVREELAQ 540 DPSLQKIMMG CNDGGSIGDQ IPSLETKNTN KPSERKRGKT EKSISLEVLQ RYFAGSLKDA 600 AKSLGVCPTT MKRICRQHGI SRWPSRKINK VNRSLSKLKR VIESVQGAEG AFALNPLSTS 660 PLPFPEHSTP NKFSQQASPT EPQIRENELD ASKVLETTRI ARAQCLEKMV NDKSGSIREV 720 GKETKGPRAK SCSSADSTNP TSHGSCHGSP PIESSPVKDI FITSNNDQCV GLRSPEATMQ 780 PPNNTLSYPT TCTMPDMVAT ELQEPFGGML VEDAGSSKDL RNLCPSVAEA IVEDMAPEPC 840 RTNPPFSGLA PKQCMDPLKE TVTPFAARIE MKTVTIKATY REDIIRFRVS LNCGIVELKE 900 EVAKRLKLEV GTFDIKYLDD DHEWVLIACD ADLQECIDVS RSSASNIIRV LVHEITSNLG 960 SSCESSG

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence Send to blast

MSESEEDKTD FASLKSKEDQ QQSPPQLPPP SAMDFDLDLE TSWPLDHLSF VSNNPMSPFL  60
FPISSEQPSS PLWLFSDAED ERHNNTLASA PAFSDFHKIF SCDSNSVTEK PVENANDEDK  120
KLLPPIVAMP PLEILDRYCV IKERMTQALR YYKELTEQNV LAQVWAPVRN GNRFVLTTSG  180
QPFVLDPHSN GLHQYRTVSL MYVFSADGEK EESLGLPGRV YQQKVPEWTP DVQYYSTKEY  240
PRRDHAQHYN VRGTLALPVF EPSMQSCVGV LELIMTSQKI NYAPEVDKIC RALEAVNLKS  300
SEILGHQYTQ ICNEGRQNAL AEILEILTVV CETHNLPLAQ TWVPCRHRSV LAHGGGLKKS  360
CSSFDGSCMG KVCMSTTDIA FYIIDAHLWG FREACVEHHL QQGQGVAGRA FSSHSMSFCR  420
NITRFCKIDY PLVHYALMFG LTSSFSICLR SSHTGDDDYV LEFFLPPRIT DFNEQKALLG  480
SILTIMKQHF QSLKIASGVE LEQNALVETI EATIEGVHLR FESIPVRQDA SPNVREELAQ  540
DPSLQKIMMG CNDGGSIGDQ IPSLETKNTN KPSERKRGKT EKSISLEVLQ RYFAGSLKDA  600
AKSLGVCPTT MKRICRQHGI SRWPSRKINK VNRSLSKLKR VIESVQGAEG AFALNPLSTS  660
PLPFPEHSTP NKFSQQASPT EPQIRENELD ASKVLETTRI ARAQCLEKMV NDKSGSIREV  720
GKETKGPRAK SCSSADSTNP TSHGSCHGSP PIESSPVKDI FITSNNDQCV GLRSPEATMQ  780
PPNNTLSYPT TCTMPDMVAT ELQEPFGGML VEDAGSSKDL RNLCPSVAEA IVEDMAPEPC  840
RTNPPFSGLA PKQCMDPLKE TVTPFAARIE MKTVTIKATY REDIIRFRVS LNCGIVELKE  900
EVAKRLKLEV GTFDIKYLDD DHEWVLIACD ADLQECIDVS RSSASNIIRV LVHEITSNLG  960
SSCESSG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.T4VLF

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015941512.1	0.0	protein NLP7 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A445BG54	0.0	A0A445BG54_ARAHY; Uncharacterized protein
STRING	GLYMA10G37860.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]