PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.RMG12

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HD-ZIP

Protein Properties

Length: 204aa MW: 23017.3 Da PI: 9.3157

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.RMG12	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.7	1.1e-19	65	119	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa+ k Aradu.RMG12 65 RKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLNLRARQVEVWFQNRRARSK 119 78889************************************************98 PP
2	HD-ZIP_I/II	115.6	2.9e-37	65	153	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF+++++L+p++K++la +L+l++rqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+++rL+keveeLr+ Aradu.RMG12 65 RKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLNLRARQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQKRRLQKEVEELRA 153 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.9E-19	50	119	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.63E-19	50	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.75	61	121	IPR001356	Homeobox domain
SMART	SM00389	8.5E-18	63	125	IPR001356	Homeobox domain
CDD	cd00086	7.55E-16	64	122	No hit	No description
Pfam	PF00046	4.5E-17	65	119	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	96	119	IPR017970	Homeobox, conserved site
SMART	SM00340	2.3E-20	121	164	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	4.8E-10	121	155	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MAVLPGSSSS LELTISVPGF ASSPPLLPSS SVKELDINQL PSEEEWIIAS NMEDEEESSN 60 GEPPRKKLRL TKEQSRLLEE SFRQNHTLNP KQKESLAMQL NLRARQVEVW FQNRRARSKL 120 KQTEMECEYL KRWFGSLTEQ KRRLQKEVEE LRAMKVGPPT VLSPHTSQPL PASSLTMCPR 180 CQRVTSTATL LSSPKSHQPP AASP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	121	RRARSKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.RMG12

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015960299.1	1e-144	homeobox-leucine zipper protein HOX3
Swissprot	Q0JKX1	1e-80	HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
Swissprot	Q9XH38	1e-80	HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBL	A0A444ZJ78	1e-142	A0A444ZJ78_ARAHY; Uncharacterized protein
STRING	GLYMA20G01770.1	1e-115	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9506	30	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	4e-78	homeobox-leucine zipper protein 17