PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.R5NW6
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 557aa    MW: 61399.2 Da    PI: 5.8405
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.R5NW6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.32.5e-084765141854
                  HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +F++  ++yp  +e+  LA k gLt +qV++WF N R +
  Aradu.R5NW6 476 MFQNflHPYPRDAEKHLLAVKSGLTRSQVSNWFINARVR 514
                  5887779******************************88 PP
2BELL53.27.6e-18351418172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +r++ ++ k++Ll+ll+ Vd rY+q+ ++++tv+   +a+++l++  +++++Al++iS  ++ L+++i+++i
  Aradu.R5NW6 351 QRHAAESNKSQLLTLLQLVDSRYSQCLDEIHTVV---HAATELDP-CIHAHFALQTISVLYKDLRERISNHI 418
                  688999***************************9...78******.9**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.7E-14274416IPR006563POX domain
PfamPF075261.1E-21279415IPR006563POX domain
PROSITE profilePS5007111.094455518IPR001356Homeobox domain
CDDcd000861.85E-11458519No hitNo description
SMARTSM003898.9E-6458522IPR001356Homeobox domain
SuperFamilySSF466892.69E-15459527IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-25461524IPR009057Homeodomain-like
PfamPF059201.7E-14475514IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MENDFYSSSL NMEHNPTPKP LLQCYSFDLN NQNNIINGIP MLDLDQGSVD GNSFINSSSI  60
LNSNSFVTSS QGKTTVGDTS NATGNGEFHE NLAGGTQPNG ALASPLTTIL AARIGLQENL  120
ENSATLLPSF EALGQYVFNN WHDTTSNSSP FPANFYGDRG YDEVPSNGKW SFNKFPKAPE  180
VEGSGLVPYA SIGNLDPNGW TSLNAANLAN HAYNSSSYSN ELSLSLATSP AAAQCSEISC  240
SDVSCGMNET RTGLEKGSCS SRELSMSLGS EKHVRFSPVI LGSKYLVGIQ EVLAQIAAYS  300
IENVEEVNYL GAGDRAGGNK STSGFAQKTT PATNSNANSS MFEAHAESPL QRHAAESNKS  360
QLLTLLQLVD SRYSQCLDEI HTVVHAATEL DPCIHAHFAL QTISVLYKDL RERISNHILA  420
TGSNFGDSCS EDKEWSVDTS FIQKQWAIQQ LKRKDQLWRP QRGLPEKSVS VLRAWMFQNF  480
LHPYPRDAEK HLLAVKSGLT RSQVSNWFIN ARVRLWKPMI EEMYAEMNRR KACRIEEGME  540
DGHRSRLSMN NHYFNMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A7e-15464522563Homeobox protein Meis2
4xrm_B7e-15464522563Homeobox protein Meis2
4xrs_A7e-15464521158Homeobox protein Meis1
4xrs_B7e-15464521158Homeobox protein Meis1
5bng_A7e-15464522159Homeobox protein Meis2
5bng_B7e-15464522159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.R5NW6
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020981159.10.0homeobox protein ATH1 isoform X1
RefseqXP_020981160.10.0homeobox protein ATH1 isoform X1
RefseqXP_020981161.10.0homeobox protein ATH1 isoform X1
RefseqXP_020981162.10.0homeobox protein ATH1 isoform X1
RefseqXP_020981163.10.0homeobox protein ATH1 isoform X1
SwissprotP487311e-102ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A444YVX30.0A0A444YVX3_ARAHY; Uncharacterized protein
STRINGGLYMA17G34811.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-100homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]