PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.B5DUD
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family YABBY
Protein Properties Length: 193aa    MW: 21622.6 Da    PI: 10.141
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.B5DUDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY142.45e-44111592163
        YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                  d++  se++Cyv+CnfCnt+la       l+ +vtv+CGhC++l  ++ +      + ++  ++++   + ++l  ++  +   ++ + s+s+s +  
  Aradu.B5DUD  11 DLVPPSEHLCYVRCNFCNTVLA------RLLDTVTVKCGHCSNLSFLSTRPPPPPAPFSHTHQTTT---IDHTLTLQGF-YGDSKKGQGSSSSSSP-- 96 
                  77899***************97......699************87755554444333333222222...2222222222.2222222233333333.. PP

        YABBY 100 klsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                    +++++  +p++ p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa f
  Aradu.B5DUD  97 --TTSNESVSPKAAPfVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARF 159
                  ..35566677777777***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.2E-4915159IPR006780YABBY protein
SuperFamilySSF470953.8E-8104158IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.4E-5113158IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MNQQDEKATM DLVPPSEHLC YVRCNFCNTV LARLLDTVTV KCGHCSNLSF LSTRPPPPPA  60
PFSHTHQTTT IDHTLTLQGF YGDSKKGQGS SSSSSPTTSN ESVSPKAAPF VVKPPEKKHR  120
LPSAYNRFMK EEIQRIKAAN PEIPHREAFS AAAKNWARFI PNSPTSSVAA RMREWWQKEI  180
FGEKSNILAR QKR
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.B5DUD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0119241e-108KR011924.1 Thermopsis turcica CRABS CLAW mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015965400.11e-101protein CRABS CLAW
RefseqXP_025697544.11e-101protein CRABS CLAW isoform X2
SwissprotQ76EJ03e-57YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A0U2DBV16e-91A0A0U2DBV1_9FABA; CRABS CLAW (Fragment)
STRINGGLYMA02G13350.28e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.14e-51YABBY family protein