PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.86C6D
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 837aa    MW: 92261.6 Da    PI: 6.4642
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.86C6DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-181674357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Aradu.86C6D 16 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                 5679*****************************************************97 PP
2START1823.2e-571603682205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l +++
  Aradu.86C6D 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIELLYMQ 256
                  7899******************************************************.8888888888****************9999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p Rdf+ +Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s+++ 
  Aradu.86C6D 257 LYAPTTLAPaRDFWLLRYTSVLEDGSLVICERSLKNTQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVL 354
                  ****************************************9998899*************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  ++kt++a+l+++++
  Aradu.86C6D 355 AQKTTMAALRQLRQ 368
                  **********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4021175IPR001356Homeobox domain
SuperFamilySSF466895.56E-171378IPR009057Homeodomain-like
SMARTSM003892.4E-151379IPR001356Homeobox domain
CDDcd000861.34E-161676No hitNo description
PfamPF000465.8E-161774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-181874IPR009057Homeodomain-like
CDDcd146862.55E-668107No hitNo description
PROSITE profilePS5084825.633150365IPR002913START domain
CDDcd088752.17E-80154369No hitNo description
Gene3DG3DSA:3.30.530.202.1E-23159366IPR023393START-like domain
SMARTSM002343.7E-43159369IPR002913START domain
SuperFamilySSF559617.28E-38159368No hitNo description
PfamPF018521.2E-54160368IPR002913START domain
PfamPF086704.4E-51694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MSMSCKDGKP GLDNGKYVRY TPEQVEALER LYHDCPKPSS IRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEALR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV YENGYFRQHT  120
QNTSLPTKDT SCESAVTSGQ RSLTNQHPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIVAISHG CTGVAARACG LVGLEPTRVA EILKDRPSWF RDCRAVDVLN  240
VLPTANGGTI ELLYMQLYAP TTLAPARDFW LLRYTSVLED GSLVICERSL KNTQNGPTMP  300
PVQHFVRAEM LPSGYLIRPC EGGGSIIHIV DHMDLEPWSV PEVLRPLYES STVLAQKTTM  360
AALRQLRQIS HEVSQSNVTG WGRRPAALRA LGQRLSRGFN EALNGFTDEG WSTIGNDGVD  420
DVTILVNSSP DKLMGLNLSF ANGFPSVSNA VLCAKASMLL QNVPPAILLR FLREHRSEWA  480
DNNMDAYSAA AIKVGPCSLS GSRVGNYGGQ VILPLAHTIE HEEFLEVIKL EGIAHSPEEA  540
MMPREVFLLQ LCSGMDENAV GTCAELIFAP IDASFADDAP LLPSGFRIIP LDSGKEASNP  600
NRTLDLASAL DIGPTGNRAS NETSGNSGSV RSVMTIAFEF AFESHMQEHV ASMARQYVRS  660
IISSVQRVAL ALSPSHLSSQ AGLRTPLGTP EAQTLARWIC NSYRCYLGVE LLKSNNEGNE  720
SLLKSLWHHS DALLCCTLKA LPVFTFANQA GLDMLETTLV ALQDITLEKI FDDHGRKILC  780
SEFPQIIQQG FACLQGGICL SSMGRPISYE RVVAWKVLNE EENAHCICFM FMNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.86C6D
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015932679.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_016170052.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_025674176.10.0homeobox-leucine zipper protein ATHB-15 isoform X1
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A444Y8Z60.0A0A444Y8Z6_ARAHY; Uncharacterized protein
STRINGXP_007150614.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]