PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.5YD67
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92084.8 Da    PI: 6.0008
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.5YD67genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-182583357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Aradu.5YD67 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                 56789****************************************************97 PP
2START160.99.9e-511643712204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W + +++ e+      g  g+++l +++
  Aradu.5YD67 164 IAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRECRSLEVFTMFPAGngGTIELVYTQ 260
                  7899******************************************************.7777777777***********999999999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l+p Rdf+++Ry+ +l+ g++v++++S++   + p+    +++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ + 
  Aradu.5YD67 261 TYAPTTLAPaRDFWTLRYTTSLENGSLVVCERSLSGSGSGPNaaaAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVV 358
                  ***********************************99999999999**************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  ++k++ a+l++ +
  Aradu.5YD67 359 AQKMTIAALRYIR 371
                  ********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.242084IPR001356Homeobox domain
SMARTSM003892.1E-152288IPR001356Homeobox domain
SuperFamilySSF466892.1E-162487IPR009057Homeodomain-like
CDDcd000864.79E-162585No hitNo description
PfamPF000467.5E-162683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-182783IPR009057Homeodomain-like
CDDcd146861.78E-677116No hitNo description
PROSITE profilePS5084827.078154382IPR002913START domain
CDDcd088757.22E-70158374No hitNo description
SMARTSM002342.6E-41163373IPR002913START domain
Gene3DG3DSA:3.30.530.206.5E-20163363IPR023393START-like domain
SuperFamilySSF559615.91E-34164375No hitNo description
PfamPF018522.3E-48164371IPR002913START domain
PfamPF086707.1E-50698841IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MAMAVAHHRE SSSSGSIDKH LDSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLQ TTSAATTDAS CDSVVTTPQH SMRDANNPAG LLTIAEETLT EFLSKATGTA  180
VDWVQMPGMK PGPDSVGIFA ISQSCSGVAA RACGLVSLEP TKIAEILKDR PSWFRECRSL  240
EVFTMFPAGN GGTIELVYTQ TYAPTTLAPA RDFWTLRYTT SLENGSLVVC ERSLSGSGSG  300
PNAAAAAQFV RAEMLPSGYL IRPCEGGGSI IHIVDHLNLE AWSVPEVLRP LYESSKVVAQ  360
KMTIAALRYI RQIAQETSGE VVYGLGRQPA VLRTFSQRLS RGFNDAVNGF NDDGWTVLNC  420
DDAEDVIIAV NSTKNLSGTS NPASSLTFLG GILCAKASML LQNVPPAVLV RFLREHRSEW  480
ADFNVDAYAA ASPKAGSYAY PGMRPTRFTG SQIIMPLGHT IEHEEMLEVI RLEGHSLAQE  540
DAFASRDIHL LQICSGIDEN AVGACSELIF APIDEMFPDD APLVPSGFRI IPLDSKPGDK  600
KDATTSNRTL DLTSGLEVGP ATTQGAGDAS SSQNTRSVLT IAFQFPFDSN LQDNVAVMAR  660
QYVRSVISSV QRVAMAISPG MNPNVGSKLS PGSPEALTLA HWICQSYSYY LGSDLLRSDS  720
LVGDSMLKSL WHHQDAILCC SLKSLPVFIF ANQAGLDMLE TTLVALQDIT LDKIFDESGR  780
KALCADFAKL MQQGYAYLPA GICMSTMGRH VSYEQAIAWK VLAAEDNTVH CLAFSFINWS  840
FV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.5YD67
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952399.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A445E4K00.0A0A445E4K0_ARAHY; Uncharacterized protein
STRINGGLYMA11G20520.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]