PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G037800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NF-YC

Protein Properties

Length: 123aa MW: 13267.3 Da PI: 8.4879

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G037800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	112.1	2.9e-35	22	102	19	98
NF-YC 19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 h+lPlarikki+k + +dvkmis eaP+++skacelfi elt+rswl + + krrtl+k d+aaa+ +tdifdflv v + Aqcoe7G037800.1.p 22 HSLPLARIKKIMKkSGDDVKMISGEAPIVFSKACELFIEELTVRSWLVTLKGKRRTLHKEDVAAAIISTDIFDFLVSLVSN 102 99********825689********************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.4E-26	15	96	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.0E-30	19	87	IPR009072	Histone-fold
Pfam	PF00808	3.7E-20	23	87	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MRQAGTYSGI LSGGISGRTG PHSLPLARIK KIMKKSGDDV KMISGEAPIV FSKACELFIE 60 ELTVRSWLVT LKGKRRTLHK EDVAAAIIST DIFDFLVSLV SNSNGGYEAP DINGEEMVVE 120 NR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-33	22	100	16	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010934734.1	4e-69	nuclear transcription factor Y subunit C-2
Swissprot	Q655V5	2e-32	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A2G5E1A1	6e-84	A0A2G5E1A1_AQUCA; Uncharacterized protein
STRING	Aquca_013_00352.1	1e-84	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-34	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Aqcoe7G037800.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]