PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G046400.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-YC
Protein Properties Length: 363aa    MW: 40927.3 Da    PI: 5.3195
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G046400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC127.45.1e-4059158298
              NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                        l+ fw+++   i+  +d+ nh+lPl+ri+k +k+d++vkm+sa+aPv+++kace+filel+lrswl +e+nkrrtl++sd+++++++ +  d
  Aqcoe2G046400.2.p  59 LQYFWAERiteINCINDLTNHQLPLSRIRKAMKSDDHVKMVSADAPVVIAKACEFFILELSLRSWLYTESNKRRTLQRSDVSTVISNIQALD 150
                        799**99855577789**************************************************************************** PP

              NF-YC  91 flvdivpr 98 
                        fl+d v +
  Aqcoe2G046400.2.p 151 FLIDAVQK 158
                        ****9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.71E-2736152IPR009072Histone-fold
PfamPF008082.1E-1680142IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-2881157IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDFGRFFKKA SSSSSSPSQM HNLMRVPNNN PPNQQPTAEG RQEKESQESN FLQARDNLLQ  60
YFWAERITEI NCINDLTNHQ LPLSRIRKAM KSDDHVKMVS ADAPVVIAKA CEFFILELSL  120
RSWLYTESNK RRTLQRSDVS TVISNIQALD FLIDAVQKPY EEDEVTGGGN EEKGVEPSQE  180
PFPVIGPNQV QQNCAEDEVT GQRRGGWQSN VMQFQMLDFN RFNNYFSGEY IRERRRGALP  240
RASDAVQISL TGSNHVQLNS SSNIGEFLVE STRDAQPRPS EAVEISLTGA NHLQLNSSDF  300
GEYLRESRRR ALPRPSDAVE ISLTSANQLQ LNSYNSILQG GEQNEELTVY RGSRFRPQSP  360
SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-295415815119HapE
4g92_C1e-295415815119HapE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136RRTLQRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-38nuclear factor Y, subunit C2