PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G002400.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NF-YC

Protein Properties

Length: 279aa MW: 31304.6 Da PI: 4.7169

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G002400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.3	7.2e-18	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P +rikki++adedv +i+ +P l+ska elf+ +l r++ + + +t++ +++++ ++fdfl +iv + Aqcoe2G002400.1.p 7 TRFPASRIKKIMQADEDVGKIAMAVPLLVSKALELFLKDLCDRTYEITLQRGAKTMNSFHLKQCIHTFNVFDFLGEIVSK 86 579************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.7E-25	2	72	IPR009072	Histone-fold
SuperFamily	SSF47113	6.29E-18	7	88	IPR009072	Histone-fold
Pfam	PF00808	1.1E-17	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MKKKLVTRFP ASRIKKIMQA DEDVGKIAMA VPLLVSKALE LFLKDLCDRT YEITLQRGAK 60 TMNSFHLKQC IHTFNVFDFL GEIVSKVPDL GGSDAAGEDR SVAKRRKAAD DEEHDSDEEI 120 KRSKTHEMGY NGNSGRGRGR GRGRGRGRNS RAVERENAQF EKSEDDVDIS PQHDKLNNVG 180 RFDDESESRD CRVSTTVGCT SDTVVRNFDL NVELTENGDT STTPPAGSFS VPVPPELKHE 240 EYPGWSISDM DQMAIDPLQF VQLNRRLDED DEDYDEEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-22	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	146	RGRGRGRGRG
2	137	147	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010245157.1	1e-108	PREDICTED: dr1-associated corepressor-like
TrEMBL	A0A2G5DYW4	0.0	A0A2G5DYW4_AQUCA; Uncharacterized protein
STRING	Aquca_014_00934.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	2e-61	NF-YC family protein

Link Out ? help Back to Top
Phytozome	Aqcoe2G002400.1.p