PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco025592.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

SRS

Protein Properties

Length: 322aa MW: 33776.6 Da PI: 7.8522

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco025592.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	173.5	1e-53	124	264	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100 g++sC+dCGnqakkdC+h RCRtCCksrgf+C thvkstWvpaa+rrerq++++++++++ a + + + ++ + + + Aco025592.1 124 GGGMSCRDCGNQAKKDCVHLRCRTCCKSRGFHCPTHVKSTWVPAARRRERQHNQQQQQQQQFAGGGSGRGEPSK----------RARE--VGG--PRE 207 5789********************************************888777655554332222211111..........1111..122..234 PP DUF702 101 etsslPeevsseavfrcvrvssvddg....eeelaYqtavsigGhvfkGiLydqGle 153 e++++P+evsseavfrcvrv+ v+d+ +ee+aY tavsigGhvfkGiL+++G++ Aco025592.1 208 EVARFPAEVSSEAVFRCVRVGPVEDEgravDEEYAYSTAVSIGGHVFKGILHHYGPD 264 6788****************954455789********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.2E-57	126	264	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-27	128	170	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.2E-21	211	263	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MAGFSLGGGR TGHNQNRDHN QQQQQQQQQQ QHQQQHPINI NPTADSLFLY GYSSSSVGGG 60 GGGGSGFQLW HQEGDFYSSR GGTGTGSGSG GGGGGAARII SFSDDHAAEG VGIMRGGSGG 120 SSGGGGMSCR DCGNQAKKDC VHLRCRTCCK SRGFHCPTHV KSTWVPAARR RERQHNQQQQ 180 QQQQFAGGGS GRGEPSKRAR EVGGPREEVA RFPAEVSSEA VFRCVRVGPV EDEGRAVDEE 240 YAYSTAVSIG GHVFKGILHH YGPDPNSSTS SDYHLLREGS PPTSAVGGDA SGAAVMIDPY 300 PTPLSGFLSG AQYYPHHTTS Q*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020082345.1	0.0	protein SHI RELATED SEQUENCE 1-like
Refseq	XP_020096466.1	0.0	protein SHI RELATED SEQUENCE 1-like
Refseq	XP_020096467.1	0.0	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9XGX0	7e-53	SHI_ARATH; Protein SHORT INTERNODES
STRING	GSMUA_Achr2P12310_001	3e-61	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	4e-43	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Aco025592.1

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]