PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco017510.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Trihelix

Protein Properties

Length: 558aa MW: 59587.3 Da PI: 8.482

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco017510.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.3	2.7e-30	419	503	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev aLi++r+ +e ++++ lk+plWee s +m++ gf+rs+k+Ckekwen+nk+++k ke+ + r +++ +tcpyf++l+ Aco017510.1 419 RWPRAEVEALIAVRSGLEAKFQEPGLKGPLWEEASGRMAALGFRRSAKRCKEKWENINKYFRKAKESGRAR-PQHAKTCPYFHHLD 503 8******************************************************************97.9999******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.539	412	476	IPR017877	Myb-like domain
CDD	cd12203	1.49E-27	418	483	No hit	No description
Pfam	PF13837	3.4E-20	418	504	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence Send to blast
MEEEAAEEEC PTCSSSWCRT GVQSSPSPPI QLLLLPLPHP SLPILSSTTT TTTTILSSTI 60 STTNLAIAAA AAAASPDPFG MPFLPIPVPL PAAAARACCR RHPTAISRSS TPLPVAAAAA 120 AAAGESLWRQ RRTPEPSLLS AAVNFKLAVD SGGGGGGGPE EESTIKELSW RPLDIDFLHN 180 SNSSNNKRHK MALATATTSL IPSRSSKYGE RGAATPTTTR SSASSRRSTS RQQQCCYNPH 240 RARCRRANQT GSGSAYRRMT TQYIAAAAEN EAPDDVGGTS ETSAGEEAAA AARKLSENRR 300 NCRCSELRRA AAAAAEAEAA AAAGDGELHA SFLEAAERRT RRTRSDESLA EQAAARVEPG 360 GGRPRPRPRL PPPPADARDS ALISFLENVS GDRIHLSEES YNKIAATSTE GAAEYSTSRW 420 PRAEVEALIA VRSGLEAKFQ EPGLKGPLWE EASGRMAALG FRRSAKRCKE KWENINKYFR 480 KAKESGRARP QHAKTCPYFH HLDVLYSSRS AVLDAVVVSK DHVGFKFGGG DRNQEGEDEE 540 GDDQNQEGDP NCNKKKL*

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence Send to blast

MEEEAAEEEC PTCSSSWCRT GVQSSPSPPI QLLLLPLPHP SLPILSSTTT TTTTILSSTI  60
STTNLAIAAA AAAASPDPFG MPFLPIPVPL PAAAARACCR RHPTAISRSS TPLPVAAAAA  120
AAAGESLWRQ RRTPEPSLLS AAVNFKLAVD SGGGGGGGPE EESTIKELSW RPLDIDFLHN  180
SNSSNNKRHK MALATATTSL IPSRSSKYGE RGAATPTTTR SSASSRRSTS RQQQCCYNPH  240
RARCRRANQT GSGSAYRRMT TQYIAAAAEN EAPDDVGGTS ETSAGEEAAA AARKLSENRR  300
NCRCSELRRA AAAAAEAEAA AAAGDGELHA SFLEAAERRT RRTRSDESLA EQAAARVEPG  360
GGRPRPRPRL PPPPADARDS ALISFLENVS GDRIHLSEES YNKIAATSTE GAAEYSTSRW  420
PRAEVEALIA VRSGLEAKFQ EPGLKGPLWE EASGRMAALG FRRSAKRCKE KWENINKYFR  480
KAKESGRARP QHAKTCPYFH HLDVLYSSRS AVLDAVVVSK DHVGFKFGGG DRNQEGEDEE  540
GDDQNQEGDP NCNKKKL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120063	1e-59	AK120063.1 Oryza sativa Japonica Group cDNA clone:J013001K22, full insert sequence.
GenBank	AP004049	1e-59	AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06.
GenBank	AP006720	1e-59	AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06.
GenBank	AP014958	1e-59	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-59	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6399	35	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	5e-38	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Aco017510.1