PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn375741
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 270aa    MW: 29340.8 Da    PI: 7.9534
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn375741genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.96.9e-131539226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                ++++C++++r+G CkyG++C+F+H+
  Achn375741 15 GEKECPYYMRNGSCKYGSNCRFNHP 39
                6789********************9 PP
2zf-CCCH21.93.1e-07150176127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C ++++tG Cky + Ck++H++
  Achn375741 150 PGRPECTYYLKTGNCKYKSGCKYHHPK 176
                 689**********************96 PP
3zf-CCCH361.2e-11198221326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 + +C+++ r+G+Ck+G+ CkF H+
  Achn375741 198 QNICSHYNRYGICKFGPACKFDHP 221
                 679********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.6E-61340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.4831341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-61440IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-101539IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-61938IPR000571Zinc finger, CCCH-type
SMARTSM003560.027149176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742149177IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-5150176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5153175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6193221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.615195223IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-5195222IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9198221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4200220IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MALYVGTFHK YPDKGEKECP YYMRNGSCKY GSNCRFNHPD PTAVGGGDAP SGYGNGGPFS  60
SQGASLSTMP PWSSPRAVNE TVPFVAVMFS PTQGLPSPNG EWNGYEAPIY QAPGRRLPTP  120
PAFALNSTAE TNFYVHHEQK MLVDEFPERP GRPECTYYLK TGNCKYKSGC KYHHPKIQIP  180
KTPAFALSDK GLPLRPDQNI CSHYNRYGIC KFGPACKFDH PVNYGHSATS TGSGPDTDTP  240
PPFGNSATTD GARMGRVEIG SEDLMQQPV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6477642e-59FJ647764.1 Actinidia arguta clone GB-AA-015 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028116349.11e-125zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ9STM44e-83C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2R6QGG80.0A0A2R6QGG8_ACTCH; Zinc finger CCCH domain-containing protein
STRINGVIT_17s0000g09990.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-85C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]