PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn371541
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 651aa    MW: 74192.5 Da    PI: 7.855
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn371541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.9e-09593637345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
       Achn371541 593 VWSAVQERALVQALKTFPKEtsqRWERVAAAVP-GKTVNQCKKKFA 637
                      6********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.1E-1993197IPR001623DnaJ domain
SuperFamilySSF465659.55E-1994175IPR001623DnaJ domain
SMARTSM002711.6E-1296171IPR001623DnaJ domain
PfamPF002266.7E-1697176IPR001623DnaJ domain
CDDcd062578.81E-1297168IPR001623DnaJ domain
PROSITE profilePS5007617.78697179IPR001623DnaJ domain
PRINTSPR006257.1E-7102120IPR001623DnaJ domain
PRINTSPR006257.1E-7120135IPR001623DnaJ domain
PRINTSPR006257.1E-7151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.901454496IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-4456496IPR009057Homeodomain-like
SMARTSM007174.6E-5458511IPR001005SANT/Myb domain
SuperFamilySSF466896.73E-7460503IPR009057Homeodomain-like
CDDcd001677.22E-4462501No hitNo description
PROSITE profilePS512939.94589644IPR017884SANT domain
SMARTSM007173.9E-9590642IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-5592636IPR009057Homeodomain-like
SuperFamilySSF466891.87E-9592648IPR009057Homeodomain-like
PfamPF002492.3E-7593636IPR001005SANT/Myb domain
CDDcd001674.38E-6594640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MVPQRCIRLI SYSHEIVDGG PIYISSNCLP VKAFKLEPAG HAFHCAALRL LGCCEEGDAD  60
CDEENVPNDK EHTYVPSTGS YSTKGKKKSG AEGQQQDHYA LLGLSHLRYL ATDEQIRKSY  120
RETALKHHPD KQAALLLAEE TEAAKQAKKD EIENHFKAIQ ESYEVLIDPL RRRIYDSTDE  180
FDDEIPADCA PQDFFKVFVP AFTRNGRWSV NQPVPSFGDD NSALKEVDSF YNFWYSFKSW  240
REFPHADEFD IEQAESRDHK RWMERQNAKL TALARKEESA RIRALVDNAY KRDPRILKRK  300
DEEKAEKQRK REAKFLAKKV QEEEAARIAE DQKRQKDEEE RRAAEAALNQ KKTREKEKNL  360
LRKERTRLRT LSVSVLSQNL LDITEEDVEN LCMSLEIERL RNLCEKMEAK EGLDQAKLLK  420
EALGCNHNLE DQMQDKNPKA NGTVQVNGSG LLSSCEKKEK LWSREEIELL RKGMQKYPKG  480
TSRRWEVISE YIGTGRPVEE ILKATKTVLL QKPDSAKVFD SFLEKRKPSP SIASPLTTRE  540
EVEGVSISNG ANSSAAKTDN DNKSSSRVSN DKKSDDVMTN ANDGISSSSD QDVWSAVQER  600
ALVQALKTFP KETSQRWERV AAAVPGKTVN QCKKKFALLK ENFRNKKNVV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1719329620123Zuotin
5dje_B2e-1719329620123Zuotin
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028100488.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A2R6Q1S50.0A0A2R6Q1S5_ACTCH; DnaJ subfamily C member 2, N-terminally processed like
STRINGXP_010067661.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95572225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain