PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn353711

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TCP

Protein Properties

Length: 782aa MW: 86961 Da PI: 7.936

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn353711	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.1	3.2e-38	30	120	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...k 89 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlq a+pai+++tgt++++as+ a+ s+s+++ss++ + Achn353711 30 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQHAEPAIIAATGTGTIPASALAAAGGSVSHHASSISaglH 120 789******************************************************************8886666666655555554431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.8E-29	35	240	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.008	36	90	IPR017887	Transcription factor TCP subgroup
SuperFamily	SSF55021	1.62E-11	339	408	No hit	No description
Gene3D	G3DSA:3.30.70.260	3.7E-4	342	405	No hit	No description
PROSITE profile	PS51671	10.379	344	423	IPR002912	ACT domain
Gene3D	G3DSA:3.30.70.260	3.1E-17	427	501	No hit	No description
SuperFamily	SSF55021	3.17E-13	428	502	No hit	No description
CDD	cd04925	9.29E-35	432	505	No hit	No description
PROSITE profile	PS51671	11.182	433	514	IPR002912	ACT domain
Pfam	PF01842	6.0E-7	433	499	IPR002912	ACT domain
SuperFamily	SSF55021	9.51E-11	681	750	No hit	No description
CDD	cd04926	3.27E-37	682	753	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.0E-12	683	751	No hit	No description
PROSITE profile	PS51671	13.652	684	763	IPR002912	ACT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0016597	Molecular Function	amino acid binding

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
MTENNNKPAE IKDFQIVIAD KEDTTKKQLA PKRSSNKDRH TKVEGRGRRI RMPALCAARI 60 FQLTRELGHK SDGETIQWLL QHAEPAIIAA TGTGTIPASA LAAAGGSVSH HASSISAGLH 120 QKLDDLGGQS RANWSMVGGN LNLGRPHLAT MAAMWPTAGF GFQSSSSSSG PSTANLGSEG 180 SNYLQRSGFP GFELSGNNMG SMSFASILGG NGHQVPGLEL GLSQDGPVGV LNSQALSQMH 240 QQMGQARMHH HQHQNQHQHQ YNQQSSPKDD SQGPLVKKHW PSNRLTSAFM QMSPTNREMM 300 KIAIGGIVEP LLYPKSLTRV HTYPRKHNFF CVVIDNNTCK DATVIQIDSF NKHGILLEVV 360 QVLTDLNLVI TKAYISSDGG WFMDVFNVVD RDGNKIRDEK VINYIRKTLE NDSFFLPPLR 420 ESVGVMPSEE HTSIELAGTD RPGLLSEVCA VLADLCCNVV NAEIWTHNSR AAAVIHIADD 480 STGCAIKDPN RLSTIKELLC NVLKGNNDLK TAKMTLSPPG VTHRERRLHQ IMFADRDYER 540 NVRAEHGRVE DISLRPHVTV MDCMEKDYTM ITMRSKDRPK LLFDTVCTLT DMQYVVFHGV 600 VHTGRMEAVQ VWTIYGIISS LLCFAHWTYI NYYPFHLIWQ HYVWIKEYYI RHVDGLPIGS 660 EAERERVMQY LEAAIERRAS GGLELELCSE DRVGLLSDIT RIFRENSLCI KRAEISTRGG 720 KAEDTFYVTD VTGNAVDPKT IDSIRQEIGK SVLRVKRNSS PSSKPLQETA MSFLFGSLFK 780 V*

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

MTENNNKPAE IKDFQIVIAD KEDTTKKQLA PKRSSNKDRH TKVEGRGRRI RMPALCAARI  60
FQLTRELGHK SDGETIQWLL QHAEPAIIAA TGTGTIPASA LAAAGGSVSH HASSISAGLH  120
QKLDDLGGQS RANWSMVGGN LNLGRPHLAT MAAMWPTAGF GFQSSSSSSG PSTANLGSEG  180
SNYLQRSGFP GFELSGNNMG SMSFASILGG NGHQVPGLEL GLSQDGPVGV LNSQALSQMH  240
QQMGQARMHH HQHQNQHQHQ YNQQSSPKDD SQGPLVKKHW PSNRLTSAFM QMSPTNREMM  300
KIAIGGIVEP LLYPKSLTRV HTYPRKHNFF CVVIDNNTCK DATVIQIDSF NKHGILLEVV  360
QVLTDLNLVI TKAYISSDGG WFMDVFNVVD RDGNKIRDEK VINYIRKTLE NDSFFLPPLR  420
ESVGVMPSEE HTSIELAGTD RPGLLSEVCA VLADLCCNVV NAEIWTHNSR AAAVIHIADD  480
STGCAIKDPN RLSTIKELLC NVLKGNNDLK TAKMTLSPPG VTHRERRLHQ IMFADRDYER  540
NVRAEHGRVE DISLRPHVTV MDCMEKDYTM ITMRSKDRPK LLFDTVCTLT DMQYVVFHGV  600
VHTGRMEAVQ VWTIYGIISS LLCFAHWTYI NYYPFHLIWQ HYVWIKEYYI RHVDGLPIGS  660
EAERERVMQY LEAAIERRAS GGLELELCSE DRVGLLSDIT RIFRENSLCI KRAEISTRGG  720
KAEDTFYVTD VTGNAVDPKT IDSIRQEIGK SVLRVKRNSS PSSKPLQETA MSFLFGSLFK  780
V*

Functional Description ? help Back to Top
Source	Description
UniProt	May bind amino acids. {ECO:0000303\|PubMed:12481063}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028084062.1	0.0	ACT domain-containing protein ACR6-like
Swissprot	Q9SGA0	0.0	ACR6_ARATH; ACT domain-containing protein ACR6
TrEMBL	A0A2R6P8W4	0.0	A0A2R6P8W4_ACTCH; ACT domain-containing protein
STRING	VIT_14s0068g01670.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	4e-70	TCP family protein

Publications ? help Back to Top
Hsieh MH,Goodman HM Molecular characterization of a novel gene family encoding ACT domain repeat proteins in Arabidopsis. Plant Physiol., 2002. 130(4): p. 1797-806 [PMID:12481063]