PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn352121

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TCP

Protein Properties

Length: 325aa MW: 34563.3 Da PI: 10.2522

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn352121	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.7	3.6e-37	78	187	1	114
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaaksk 98 aa+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+pai ++tgt++ +a ++ ++ + s+ a++a +k Achn352121 78 AAVKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEPAIVAATGTGTVPAIAMsVGGALKISNT-----TTASAASATK 171 689**************************************************************9999955532222222222.....1122222223 PP TCP 99 ksqksaasalnlakes 114 +++k++++ n++++s Achn352121 172 QKRKRPSNSDNVDANS 187 3333333334444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-29	84	180	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.972	85	139	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MTSLMKPERE EHDNKCTADN RNNGGGDTDS VTRTAELHWK QTPVAVLKEE KDVEERPAAV 60 AMMVPVAMPI PMPVQTAAAV KRPSTKDRHT KVEGRGRRIR IPATCAARIF QLTRELGHKS 120 DGETVRWLLE HAEPAIVAAT GTGTVPAIAM SVGGALKISN TTTASAASAT KQKRKRPSNS 180 DNVDANSPTT ASPPTAWAPL AGAPQPQTLI PMWAIQSNSG PTFWIVPPTA TAVAGPSNQP 240 QIWTPLINIS ARPISSFVAS TQQTPLEIQS LSSTITTSST IGAKSEKSAS ISAPSTSSSG 300 KTAHMLREFS MEICDKREVQ FMKP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002272896.1	1e-107	PREDICTED: transcription factor TCP9
Swissprot	O64647	8e-68	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A2R6QS79	0.0	A0A2R6QS79_ACTCH; Transcription factor like
STRING	VIT_15s0048g01150.t01	1e-106	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	4e-59	TCP family protein