PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn317281

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TCP

Protein Properties

Length: 349aa MW: 36583.5 Da PI: 8.2365

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn317281	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.5	7e-36	73	171	1	101
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg....ka 90 aa+++++++++hTkv+gR+RR+Rl+a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ +++ k+ Achn317281 73 AAARRSSTKDRHTKVEGRGRRIRLPATCAARIFQLTRELGHKSDGETVRWLLEHAEEAIIEATGTGTVPAIAVsvggtL-----------KIPtslaKN 160 5899*************************************************************88888444222210...........111111122 PP TCP 91 aksaakskksq 101 +++ +++++++ Achn317281 161 ESEGPNKRRRR 171 22222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.5E-29	79	158	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.978	80	134	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MSSFQDHEFE PDDDGGGISD LSISADRPES STRPVFKEEP IDSDPKPNNV SIPIGMMPLM 60 QMQVVPAPMP VAAAARRSST KDRHTKVEGR GRRIRLPATC AARIFQLTRE LGHKSDGETV 120 RWLLEHAEEA IIEATGTGTV PAIAVSVGGT LKIPTSLAKN ESEGPNKRRR RASSSEFYDV 180 NAGSDGVSQA AGLAPVVPTA AAPQGMVPIW AVSNAGMMIP SNAVWVIPQA EAAAPVAVAT 240 GLNQPQLWTI SSSVTPVFNM TARPISSLVS VAQSVTAVSP AVCGSLMTAE TASGGAAKAG 300 AKKSSMAPAS VSSKAQMLRD FSMEIYDKRE LQFMGRTASQ QTQSTSKP*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MSSFQDHEFE PDDDGGGISD LSISADRPES STRPVFKEEP IDSDPKPNNV SIPIGMMPLM  60
QMQVVPAPMP VAAAARRSST KDRHTKVEGR GRRIRLPATC AARIFQLTRE LGHKSDGETV  120
RWLLEHAEEA IIEATGTGTV PAIAVSVGGT LKIPTSLAKN ESEGPNKRRR RASSSEFYDV  180
NAGSDGVSQA AGLAPVVPTA AAPQGMVPIW AVSNAGMMIP SNAVWVIPQA EAAAPVAVAT  240
GLNQPQLWTI SSSVTPVFNM TARPISSLVS VAQSVTAVSP AVCGSLMTAE TASGGAAKAG  300
AKKSSMAPAS VSSKAQMLRD FSMEIYDKRE LQFMGRTASQ QTQSTSKP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028063287.1	1e-150	transcription factor TCP19-like
TrEMBL	A0A2R6QNF3	0.0	A0A2R6QNF3_ACTCH; Transcription factor like
STRING	VIT_02s0025g04590.t01	1e-117	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13731	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-57	TCP family protein