PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn310101

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 809aa MW: 93170.5 Da PI: 6.3385

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn310101	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.2	4.7e-22	201	283	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn YAke GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+++++eleHnH ++ Achn310101 201 FYNCYAKEQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMVKFRLTENKRWRIIEVELEHNHLIN 283 9*************99997.66779**********99888.....*********************************775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50966	7.504	37	73	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8	45	62	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.007	48	75	IPR006564	Zinc finger, PMZ-type
Pfam	PF03101	4.3E-19	201	283	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-22	404	498	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.347	691	727	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0015	702	729	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	0.0057	704	723	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence Send to blast
MMSSCLSVTQ IRAIGPMITY MVKEREEDGD LRGVRKFEVI YDKAGVEVRC ICSCFNFKGY 60 LCQQALCVLN YNRVEEIPSQ YVLSLWRKDF KLMDVPDLGS NSIDITNPVQ WFDHLYKLAL 120 QVVKEGMISQ DHYMVAWQAF KMDEFSPNSE PTYDDEVDEF EIEGDCGMAD YIGQSGVIQG 180 ENPLPPAVGM EFDSYEDVYY FYNCYAKEQG FGVRVSNTWY RKSKERYRGK LSCSSAGFKK 240 KSEANRPRPE TRTGCPAMVK FRLTENKRWR IIEVELEHNH LINPTSGKFY KSHKNVGGGT 300 KRPLPSDSAE EVQKIRLFRT VIIDTEDNEK LYVDDGEFGI TVDQSNQLKL KLGDAQAIYS 360 FFCHLQLMSP NFFYVTDLNE KGYLRNVFWA DARCRVAYGY FGDVVAIEAT CLTDKYEVPL 420 VVFTGVNHHG QPVLLGCGLL AGEMLESFTW LFRAWLTYML GRPPPAIISD QSRSLQAALA 480 DVFPRASLCL SISHIMKKVP EKLGGLNEYE AINVALNRAV YHTLRVDEFE AAWENMIQRY 540 GIRDHKWLQT LYEDRKRWVP VYLKETLLAG MFPIRPSDGV NSFFEGFLHK HTPLKDFLSN 600 YDQALQKIHQ EAALADMESR SSSPPLKTRF YFELQLLKLY TNNIFKKFQS EVEGMYSCFS 660 TRQISADGSI MTYIVKEHAE VAENRRETID YEVIYNTSEA EVLCVCGLFN FRGYLCRHAM 720 VILNQSGMEE IPPQYILSRW RKDIPRNYVL DNGCNVIDIN NPVHRYDHLY KCGMQVVEQG 780 RKSQDCYKFA LQALDDLLNK VRIAKDLA*

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence Send to blast

MMSSCLSVTQ IRAIGPMITY MVKEREEDGD LRGVRKFEVI YDKAGVEVRC ICSCFNFKGY  60
LCQQALCVLN YNRVEEIPSQ YVLSLWRKDF KLMDVPDLGS NSIDITNPVQ WFDHLYKLAL  120
QVVKEGMISQ DHYMVAWQAF KMDEFSPNSE PTYDDEVDEF EIEGDCGMAD YIGQSGVIQG  180
ENPLPPAVGM EFDSYEDVYY FYNCYAKEQG FGVRVSNTWY RKSKERYRGK LSCSSAGFKK  240
KSEANRPRPE TRTGCPAMVK FRLTENKRWR IIEVELEHNH LINPTSGKFY KSHKNVGGGT  300
KRPLPSDSAE EVQKIRLFRT VIIDTEDNEK LYVDDGEFGI TVDQSNQLKL KLGDAQAIYS  360
FFCHLQLMSP NFFYVTDLNE KGYLRNVFWA DARCRVAYGY FGDVVAIEAT CLTDKYEVPL  420
VVFTGVNHHG QPVLLGCGLL AGEMLESFTW LFRAWLTYML GRPPPAIISD QSRSLQAALA  480
DVFPRASLCL SISHIMKKVP EKLGGLNEYE AINVALNRAV YHTLRVDEFE AAWENMIQRY  540
GIRDHKWLQT LYEDRKRWVP VYLKETLLAG MFPIRPSDGV NSFFEGFLHK HTPLKDFLSN  600
YDQALQKIHQ EAALADMESR SSSPPLKTRF YFELQLLKLY TNNIFKKFQS EVEGMYSCFS  660
TRQISADGSI MTYIVKEHAE VAENRRETID YEVIYNTSEA EVLCVCGLFN FRGYLCRHAM  720
VILNQSGMEE IPPQYILSRW RKDIPRNYVL DNGCNVIDIN NPVHRYDHLY KCGMQVVEQG  780
RKSQDCYKFA LQALDDLLNK VRIAKDLA*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023879507.1	0.0	uncharacterized protein LOC111991932
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2R6QFW7	0.0	A0A2R6QFW7_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	EOY25901	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]