PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn293631

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TCP

Protein Properties

Length: 320aa MW: 36354.5 Da PI: 7.7527

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn293631	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.7	2.2e-30	52	161	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesssssa 82 g kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i++l+ + s++ +c Achn293631 52 FGSKDRHSKVYTVKGLRDRRVRLSVPTAIQLYDLQDQLGLSQPSKVVDWLLNAAKDEIDKLPPLqmpnfgpshqalvasdlgVSDP--NC--------- 139 578*************************************************************7774433332222222211111..11......... PP TCP 83 snsssg..................k 89 ++ + + Achn293631 140 QT---NkkgfninnsvnwedqlglA 161 11...11122232333333333220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.1E-29	54	195	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.789	54	112	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MITTSREEDL TIKQEGHTVD KFSKASSRTT TSTSTPWSRF KDPRIVRVSR AFGSKDRHSK 60 VYTVKGLRDR RVRLSVPTAI QLYDLQDQLG LSQPSKVVDW LLNAAKDEID KLPPLQMPNF 120 GPSHQALVAS DLGVSDPNCQ TNKKGFNINN SVNWEDQLGL ARSNFWDSDA NLRDKLKEVA 180 TDERENWNRR NEEEKQESVG ISPNNFIPRS NHLAIPGLLN NVMTYNTNLY RLEHSSFSYI 240 PPQTDDNQNF INIVSQPYFP SNSVEFDLKQ INHFQMLSSS TSRNTLSNSL TPTLYSTNQS 300 MKPLQLMSVT ENNDEFPPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	5e-19	59	113	1	55	Putative transcription factor PCF6
5zkt_B	5e-19	59	113	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028108887.1	1e-114	transcription factor TCP13-like
Refseq	XP_028108888.1	1e-114	transcription factor TCP13-like
Refseq	XP_028108889.1	1e-114	transcription factor TCP13-like
Swissprot	Q9FME3	6e-43	TCP5_ARATH; Transcription factor TCP5
TrEMBL	A0A2R6RYJ8	0.0	A0A2R6RYJ8_ACTCH; Transcription factor like
STRING	EOY03699	3e-94	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	7e-43	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]