PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn288721

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TCP

Protein Properties

Length: 458aa MW: 48333.3 Da PI: 7.4842

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn288721	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.4	1.5e-39	68	210	1	112
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 aa++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlq a+pai ++tgt++++a+++ ++s +ss+s+ s++ Achn288721 68 AAAAKRPTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQHAEPAIVAATGTGTIPANFStLNVSLRSSGSTISAPpsksaphsfh 166 5789******************************************************************99988888888888444446666778888 PP TCP 89 ....................kaaksaakskksqksaasalnlak 112 +++ +++++++q++++++++l Achn288721 167 galalahhpyeegfshmlgfQHQLHHHQQQQQQQQQSQHQQLLT 210 88889999999999999998555555555555555555555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.6E-40	75	207	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.698	75	129	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MELSDLHNNN NKQTNTTTTA TASSHRAVNF DFRSGVGAAS GAPPPQLVDA SLAIATRSEQ 60 QITVAAPAAA AKRPTKDRHT KVDGRGRRIR MPATCAARVF QLTRELGHKS DGETIEWLLQ 120 HAEPAIVAAT GTGTIPANFS TLNVSLRSSG STISAPPSKS APHSFHGALA LAHHPYEEGF 180 SHMLGFQHQL HHHQQQQQQQ QQSQHQQLLT AEQIADAMPG GGDGGGNSTE NYLRKRFRED 240 LFKEESQSQQ GDASAAPSSP SNKQFKGGLQ LPKQQDQAGP SSSMLRHPNM MPTGMWAVAP 300 APSSGAGSTF WMLPVTAAGG GGAGGSGQTV SLAAAPTSGA GPDPPQVWPF AAAAPAASGV 360 TLQAPLFLPR FNIPGNLEFQ GGRAGSLQLG SMLMQQQPSQ TNLGMLAALN AYSIGGLNMN 420 SEQNNRLEHH QHQQHQHQHQ HQPQTTDSGE DDPNSSQ*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MELSDLHNNN NKQTNTTTTA TASSHRAVNF DFRSGVGAAS GAPPPQLVDA SLAIATRSEQ  60
QITVAAPAAA AKRPTKDRHT KVDGRGRRIR MPATCAARVF QLTRELGHKS DGETIEWLLQ  120
HAEPAIVAAT GTGTIPANFS TLNVSLRSSG STISAPPSKS APHSFHGALA LAHHPYEEGF  180
SHMLGFQHQL HHHQQQQQQQ QQSQHQQLLT AEQIADAMPG GGDGGGNSTE NYLRKRFRED  240
LFKEESQSQQ GDASAAPSSP SNKQFKGGLQ LPKQQDQAGP SSSMLRHPNM MPTGMWAVAP  300
APSSGAGSTF WMLPVTAAGG GGAGGSGQTV SLAAAPTSGA GPDPPQVWPF AAAAPAASGV  360
TLQAPLFLPR FNIPGNLEFQ GGRAGSLQLG SMLMQQQPSQ TNLGMLAALN AYSIGGLNMN  420
SEQNNRLEHH QHQQHQHQHQ HQPQTTDSGE DDPNSSQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028088914.1	0.0	transcription factor TCP8-like
Refseq	XP_028088915.1	0.0	transcription factor TCP8-like
TrEMBL	A0A2R6RGJ9	0.0	A0A2R6RGJ9_ACTCH; Transcription factor like
STRING	EOX97160	1e-166	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11484	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-65	TCP family protein