PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn277561

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TCP

Protein Properties

Length: 450aa MW: 49108.2 Da PI: 7.0871

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn277561	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.3	6.7e-35	114	227	2	100
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec.eaesssssasnsssg.. 88 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++ + ++ e+++ + s + ss+ Achn277561 114 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKAAIDELDELppwkptsgdQ----NNPhEPQQIRDSFGGTSSNil 208 79**************************************************************7766543321....111233333333333333355 PP TCP 89 ......kaaksaa.kskks 100 +++++ + ++ + Achn277561 209 laggdvQHQEQLMeMTNAR 227 5555552222222233333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.1E-31	114	213	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.064	116	174	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MPSLSSTTTN RIVRTFYTRT PLLLLRPIVK TDLCAKLRKT GHRHVEEEEN QNQHQSPKKR 60 SYLSSSSSLG QNVEYVQGKM EETQHHRQTP SRLGLRHAGG EIVEVEGGHI VRSTGRKDRH 120 SKVCTAKGPR DRRVRLAAHT AIQFYDVQDR LGYDRPSKAV DWLIKNAKAA IDELDELPPW 180 KPTSGDQNNP HEPQQIRDSF GGTSSNILLA GGDVQHQEQL MEMTNAREND SGGFLPASLD 240 SDAIADTIKS FFPMGGASAE TNNSSSMQFQ NFPPPDLLSR TGGQRQQDLR LSLQSMDDQI 300 LLHHQHQPPP QSQPLFSGLG FDAATSGGWW NAGGGDAASS GGGGGGFIFN SPPPPTPFFG 360 QNNQFVSQRG PLQSSNTPYV RTWIDPCSIS AAADHHHQSV PLHPSFSGIS FASVGGFSGF 420 RIPTRLQGEE EEHDGISDKP SSASSDSRH*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MPSLSSTTTN RIVRTFYTRT PLLLLRPIVK TDLCAKLRKT GHRHVEEEEN QNQHQSPKKR  60
SYLSSSSSLG QNVEYVQGKM EETQHHRQTP SRLGLRHAGG EIVEVEGGHI VRSTGRKDRH  120
SKVCTAKGPR DRRVRLAAHT AIQFYDVQDR LGYDRPSKAV DWLIKNAKAA IDELDELPPW  180
KPTSGDQNNP HEPQQIRDSF GGTSSNILLA GGDVQHQEQL MEMTNAREND SGGFLPASLD  240
SDAIADTIKS FFPMGGASAE TNNSSSMQFQ NFPPPDLLSR TGGQRQQDLR LSLQSMDDQI  300
LLHHQHQPPP QSQPLFSGLG FDAATSGGWW NAGGGDAASS GGGGGGFIFN SPPPPTPFFG  360
QNNQFVSQRG PLQSSNTPYV RTWIDPCSIS AAADHHHQSV PLHPSFSGIS FASVGGFSGF  420
RIPTRLQGEE EEHDGISDKP SSASSDSRH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-19	121	174	1	54	Putative transcription factor PCF6
5zkt_B	1e-19	121	174	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM468863	1e-67	AM468863.2 Vitis vinifera contig VV78X023076.3, whole genome shotgun sequence.
GenBank	FQ381831	1e-67	FQ381831.1 Vitis vinifera clone SS0ABG82YF20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028068857.1	1e-150	transcription factor TCP4-like
Swissprot	Q9MAH8	9e-93	TCP3_ARATH; Transcription factor TCP3
TrEMBL	A0A2R6PTG5	0.0	A0A2R6PTG5_ACTCH; Transcription factor like
STRING	XP_009785152.1	1e-127	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3207	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	1e-50	TCP family protein

Publications ? help Back to Top
Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]