PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn275181
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 426aa    MW: 46165.1 Da    PI: 8.0107
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn275181genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.32.8e-38782352136
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssaseceaes 77 
                  g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a ++i+el++                        +           
  Achn275181  78 SGGKDRHSKVLTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLLKAASRSIDELPSInssfpdtpkqlsdekrlsvgaeqG----------- 165
                 689***********************************************************99665554444433333333322221........... PP

         TCP  78 ssssasnsssg....................kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
                                                 + +++a+s++s++s+ s l+l++ esr kar+rar r++ek + k+k+
  Achn275181 166 ----------FdstememdggdptsqqqqqlVSLSKSACSSNSETSKGSGLSLSRcESRIKARERARGRKAEKEKEKEKE 235
                 ..........1223333444444444455556777778999999999999***********************9998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.6E-4079231IPR005333Transcription factor, TCP
PROSITE profilePS5136931.34580138IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.916211230IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEVDKIQTQG CKFPRIGNSR GDCNVGQNGE EKYPNDEEGG VVKRRGENGG GLEIGGGIGI  60
GRFLGWPSSR IVRVPRASGG KDRHSKVLTS KGLRDRRVRL SVTTAIQFYD LQDRLGYDQP  120
SKAVEWLLKA ASRSIDELPS INSSFPDTPK QLSDEKRLSV GAEQGFDSTE MEMDGGDPTS  180
QQQQQLVSLS KSACSSNSET SKGSGLSLSR CESRIKARER ARGRKAEKEK EKEKESECIH  240
PNVNPISQSS FTELLTGSIN NVNNISSGGG DPNYFSPMLL APSSSRQHHF SGFSGQIHLG  300
NSLPPPFTIA GDHHHSDLQH FAFVPDHFIP VTSSSVGSDY NLNFTISSGL AGLNRGTLQS  360
NSPSLLPHLQ RLSPHIDGSN NLPFFISTSA PNAASMETHH QFPPGLDGHL HLRYGDSDHK  420
VKGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2485139155Putative transcription factor PCF6
5zkt_B2e-2485139155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028090971.10.0LOW QUALITY PROTEIN: transcription factor TCP2-like
TrEMBLA0A2R6RG300.0A0A2R6RG30_ACTCH; Transcription factor like
STRINGVIT_10s0003g03910.t011e-154(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-56TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2