PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn274211
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 1029aa    MW: 116082 Da    PI: 7.2862
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn274211genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH391.3e-12191214427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 e C+ ++rtGtCk+G++CkF+H+p
  Achn274211 191 EDCSLYMRTGTCKFGSNCKFNHPP 214
                 89********************96 PP
2zf-CCCH38.42.1e-12260284226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C++++r+G CkyG++C+F+H+
  Achn274211 260 GEKECPYYMRNGSCKYGSNCRFNHP 284
                 7899********************9 PP
3zf-CCCH382.7e-12344368226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C++++r+G CkyG++C+F+H+
  Achn274211 344 GEKECPYYMRNGSCKYGSNCRFNHP 368
                 6789********************9 PP
4zf-CCCH18.34e-06909935127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C ++++tG Cky + Ck++H++
  Achn274211 909 PGRPQCTYYLKTGDCKYKSGCKYHHPK 935
                 6899*********************96 PP
5zf-CCCH33.85.9e-11957980326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 + +C+++ r+G+Ck+G+ CkF H+
  Achn274211 957 QNICSHYNRYGICKFGPACKFDHP 980
                 679********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.4E-6187214IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6187215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915187215IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10191214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-5193212IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-7258285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.568258286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6260285IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-10260284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5264283IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6342369IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286342370IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-10344368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6346369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5348367IPR000571Zinc finger, CCCH-type
SMARTSM003567.7471498IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.422471499IPR000571Zinc finger, CCCH-type
SMARTSM003561.1517544IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.939517545IPR000571Zinc finger, CCCH-type
SMARTSM003560.74908935IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112908936IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5952980IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-5954981IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.615954982IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8957980IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1029 aa     Download sequence    Send to blast
MGSKLSSLPS TDPDPGLDPP RDLGLQTVNE EHQNQQISVE EELQYQRIIY EGLQNQQISV  60
EEELQYQRII YEELQNQQLS GEQELQYLQQ IIYEGLQNQQ LSGEQDLQNL VLEEVEKLRV  120
EVAIREENKT NEEGISRQLD AEREEGIDGD KRTQNEGEHG DDGDESGGEE VGESKDGRYE  180
RYSYPVRPDA EDCSLYMRTG TCKFGSNCKF NHPPRRKNQY YLRSGGSKYG KACRYNRSRG  240
KTPVVPIVDV NFLDLPVRPG EKECPYYMRN GSCKYGSNCR FNHPDPIAVG GGDAPSGYSN  300
GGSFSSQGVS LSAMPPWSSP RAVNKTVPFV PPTQGLPSPN GDQGEKECPY YMRNGSCKYG  360
SNCRFNHPDP TAVGGGDAPS GYGNGGSFSS QGVSLSAMPP WLSPRAVNET VPFVPPTQGL  420
PSPNGDQAPV YVAPHQRRLP TPPAFALNSA PETNCYMYHK QQMLVDEFPE RPGQPHCTCY  480
LKTGDCKYKS GCKYHHPKIQ IPKTPTFALS DKGLLLRPDQ NICSRYNRYG IYNFGPACKF  540
DHPVRYCPSA TSTGPGPDYP EVEAEAKLVA EDLAINYFWN DIAFREAIKE DEERIQTALE  600
SEEEGTHGNG DWAVKLGINL FYSANLGRSP LYKRDTEEGE EDNTSFHGWA KPEVKRERLS  660
KRALPAETNF EIKKIGKKRK NTTQKEGGAI KKSKSTKRAK KSPIVKRRDK EEGEYSYDVE  720
LVWKRHTARK RARKGPTVKR RDEEEGEYPS DVEPIWKRQT ASKRAKKGPT VKMKDEEEGE  780
YTSDVEPVWK RHIASKRVKK GPTVRKRGEE EGEYPSDVEP VWKRHTSKKR ERKGPTVKRI  840
DEEEGEYSRD VELAWKRHTA RTMEPSEEHF VPKPHTHTHT HTHTHEHEPL HELSHHKQQM  900
LVDEFPERPG RPQCTYYLKT GDCKYKSGCK YHHPKIQIPM TSTFALSDQG LPLRPDQNIC  960
SHYNRYGICK FGPACKFDHP VNCGPSTTST GSGPDIDRPP PFGNSATTDG ARMGRVEIGS  1020
EALMQKPV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6477642e-34FJ647764.1 Actinidia arguta clone GB-AA-015 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028116349.11e-125zinc finger CCCH domain-containing protein 67 isoform X1
TrEMBLA0A2R6PDR80.0A0A2R6PDR8_ACTCH; Zinc finger CCCH domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-77C3H family protein