PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn258161

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TCP

Protein Properties

Length: 264aa MW: 27941.6 Da PI: 10.21

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn258161	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123	3.4e-38	41	127	3	87
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsss 87 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ + + +++s+s+ss+ Achn258161 41 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStvSVSLRNNSSSHSSI 127 79******************************************************************8884322222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	46	100	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.5E-34	46	132	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MSRDVYCTRE IKEHGATNGV TNGAIIEHQQ RQQPPNGALV VKKPPAKDRH SKVDGRGRRI 60 RMPIICAARV FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPASF STVSVSLRNN 120 SSSHSSISAA LDPKPMITPT PFILGKRLLP IDDTVDGAAK DDVSPSLGGP AAASGGFWAL 180 PARPDFGQVW SFAAAPPEMV VSSPAMASQP SFTGRFMQQQ PMGEASAARV GNYLPIAQGH 240 LNLLASLSSA PTTSSGRRED DPR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	1e-63	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	1e-63	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	1e-63	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-63	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028051557.1	1e-127	transcription factor TCP7
Swissprot	Q9FMX2	6e-88	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2R6PBC0	1e-180	A0A2R6PBC0_ACTCH; Transcription factor like
STRING	VIT_10s0042g00170.t01	1e-120	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-62	TCP family protein