PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn250761
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 419aa    MW: 44536.3 Da    PI: 7.0066
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn250761genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.66.6e-36166246288
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg 88 
                 a+ k+ ++++hTkv+gR+RRvR++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++  +        ++ +++
  Achn250761 166 APPKRATKDRHTKVEGRGRRVRMPAGCAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsvN--------GTLKIP 246
                 567999**********************************************************99998444211........111122 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001180.001152769No hitNo description
PfamPF036341.9E-29171256IPR005333Transcription factor, TCP
PROSITE profilePS5136927.745172226IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MKVSTLADDD RQQVRGSQLL DRPCNEIYVV GEGETLHTIS NKCGDPFIVE QNPHIHDTDD  60
VFPGLVIKIT PSKPRKLLRS VMASIENQSI EPGDDEINNS HDDLLPLEFT ITAVPPPPEE  120
AKTRDRAIVP SLKEEPTNSD LEGSIQVGVM AVSTKSAEIV KSAVVAPPKR ATKDRHTKVE  180
GRGRRVRMPA GCAARIFQLT RELGHKSDGE TIRWLLERAE PAIIEATGTG TVPAIAVSVN  240
GTLKIPTTST AAIEGDTTKK KRKRACNSDF CDVNDSGSSN FAPVTPVTNV TPQGLVPVWA  300
LGAGGFVPPS AAVHGGAFFM IPPAGHSNHQ QLWAIPATAT PVFNVSARPI SNFVAASGGS  360
TSSSASGERK SGKVSTMAPS SSSAATTTTQ MLRDFSLEIY DKKELQFMIR SGGDQSPS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00064PBMTransfer from AT5G51910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028075247.11e-120transcription factor TCP19-like
SwissprotQ9LT899e-80TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A2R6RWE00.0A0A2R6RWE0_ACTCH; Transcription factor like
STRINGMigut.F00395.1.p1e-102(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.24e-78TCP family protein