PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn246011
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 652aa    MW: 74333.7 Da    PI: 8.1401
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn246011genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding284.9e-09594638345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
       Achn246011 594 VWSAVQERALVQALKTFPKEtsqRWERVAAAVP-GKTVNQCKKKFA 638
                      6********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1106.4E-2193196IPR001623DnaJ domain
SuperFamilySSF465653.79E-2093175IPR001623DnaJ domain
SMARTSM002713.2E-1496171IPR001623DnaJ domain
CDDcd062572.08E-1397168IPR001623DnaJ domain
PfamPF002262.5E-1797176IPR001623DnaJ domain
PROSITE profilePS5007618.47197179IPR001623DnaJ domain
PRINTSPR006254.3E-8102120IPR001623DnaJ domain
PRINTSPR006254.3E-8120135IPR001623DnaJ domain
PRINTSPR006254.3E-8151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.028455497IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.3E-4455497IPR009057Homeodomain-like
SMARTSM007176.9E-5459512IPR001005SANT/Myb domain
SuperFamilySSF466892.26E-6461504IPR009057Homeodomain-like
CDDcd001670.00307462502No hitNo description
PROSITE profilePS512939.94590645IPR017884SANT domain
SMARTSM007173.9E-9591643IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-9593649IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-5593637IPR009057Homeodomain-like
PfamPF002492.3E-7594637IPR001005SANT/Myb domain
CDDcd001673.73E-6595641No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MVPQRCVRLI SYSQEIVDGG PIYISSNCLP VKAFKLEPAG HAFHSTALRL LGCCEEGDAD  60
GDDETVPNDK EHTYVPSTGS YSTKGKKKSG AEGKQQDHYA LLGLSHLRYL ATEEQIKKSY  120
RETALKHHPD KQAALLLAEE TEAAKQAKKD EIENHFKAIQ EAYEVLIDPL RRRIYDSTDE  180
FDDEIPADCA PQDFFKVFVP AFTRNGRWSV NQPVPSLGDE NSALKEVDSF YNFWYSFKSW  240
REFPHADEFD LEQAESRDHK RWMERQNAKL TALARKEESA RIRALVDNAY KRDPRILKRK  300
EEEKAEKQRK KEAKFLAKKV QEEEAARIAK EHRRQKEEEE RQAAEAALHQ KKTREKEKKL  360
LRKERTRLRT LSASVLSRNL LDITEEDVEN LCMSLEIERL RNLCEKMEAK EGVEQAKLLK  420
EALGCNHNLE DQMQDKNPKA NGFVQVNGSD LLSSSREKKE KPWGREEIEL LRKGMQKYPK  480
GTSRRWEVIS EYIGTGRPVE EILKATKTVL LQKPDSAKVF DSFLEKRKPS QSIASPLTTR  540
EEVEGVSISN GVKSSAAKTD NDNESSSQVA NDKNSDDVMT NANDGISSSS DQDVWSAVQE  600
RALVQALKTF PKETSQRWER VAAAVPGKTV NQCKKKFALL KENFRNKKNV V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1819329620123Zuotin
5dje_B2e-1819329620123Zuotin
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028100488.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A2R6Q1S50.0A0A2R6Q1S5_ACTCH; DnaJ subfamily C member 2, N-terminally processed like
STRINGXP_010067661.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95572225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain