PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn245201

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TCP

Protein Properties

Length: 319aa MW: 35872 Da PI: 6.9677

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn245201	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101.7	1.3e-31	53	167	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesssssas 83 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i+el+ + ++++ s+ss+ Achn245201 53 GGKDRHSKVCTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKDEIDELPPLqmpnfgpnyqalvasdlgVFDPN------SQSSK-- 143 78*************************************************************77755554433333333311111......11111.. PP TCP 84 nsssg......................k 89 + + Achn245201 144 ----EgvkistnvkwkdqlglarsnfwD 167 ....122122222222222222222221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.6E-29	54	179	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.593	54	112	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MITTSREEDF APKQEGHTVE KNSKASSSAT ISTSTSWSRF KDPRIVRVSR TFGGKDRHSK 60 VCTVKGLRDR RVRLSVPTAI QLYDLQDRLG LSQPSKVVDW LLNAAKDEID ELPPLQMPNF 120 GPNYQALVAS DLGVFDPNSQ SSKEGVKIST NVKWKDQLGL ARSNFWDSDS NLRDKSKEVA 180 TDERENWTLR NEEEKQESGG ISPNFFPKSN HLAIPGFLNN VMPYNSSFYR LEPSSFSFIS 240 PQTEDNQNFI NIGSQPYFPS NSIEFDPKQI NHFQMLSSST SRNPMSNALA PTLYSTSQSM 300 KPLQLMSMAE NNDEFPPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	7e-18	59	113	1	55	Putative transcription factor PCF6
5zkt_B	7e-18	59	113	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028108887.1	1e-121	transcription factor TCP13-like
Refseq	XP_028108888.1	1e-121	transcription factor TCP13-like
Refseq	XP_028108889.1	1e-121	transcription factor TCP13-like
Swissprot	Q9FME3	1e-46	TCP5_ARATH; Transcription factor TCP5
TrEMBL	A0A2R6RUG7	0.0	A0A2R6RUG7_ACTCH; Transcription factor like
STRING	VIT_14s0068g00330.t01	4e-98	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	2e-48	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]