PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn230981
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 595aa    MW: 67811.1 Da    PI: 8.9492
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn230981genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.53.1e-34194251259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s+fprsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+
  Achn230981 194 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCTVKKRVERSFQDPSVVITTYEGQHNHP 251
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-35178253IPR003657WRKY domain
SuperFamilySSF1182901.14E-29185253IPR003657WRKY domain
PROSITE profilePS5081132.558188253IPR003657WRKY domain
SMARTSM007741.2E-40193252IPR003657WRKY domain
PfamPF031061.2E-26194251IPR003657WRKY domain
PfamPF077792.6E-10394444IPR012419Cas1p 10 TM acyl transferase domain
PfamPF077793.5E-16502567IPR012419Cas1p 10 TM acyl transferase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MGLNNFERRR DGLMMTWAPH QPTYNYTKPA RTTKYLPRAS RVEQTVQRRA TGFSFSLNNA  60
SLSLSNPQSH DDPQGFDSPY MSFTECLQGS SDYNTLAMAF GLSPPPSEPR SVVKVEQNPV  120
ADGSGETLVT PNFSVSSSSS EAGGDEGKND RQQQESGDGG ESSKKVNKSK KKGEKREREP  180
RFAFMTQSEV DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT TQKCTVKKRV ERSFQDPSVV  240
ITTYEGQHNH PIPTTLRGNV GGMLPPSMFT SGVPPMEIFP DIFNGAISYH FQVSFLLGFI  300
PIFVAWIYSE FLEYKKSASP SKVHSDNNLV ELGNETIKED DRAILLEGGL TKSASAKLYT  360
SSIKTNLIRS EFGVILVYFY TCDRTDLLAE STKVLFLMYH YFAATEIYNA IRVFIAAYVW  420
MTGFGNFSYY YIRKDFSLAR FSQVEKWIER LEESETKRRR TIKTCIVAVS SFVGYLWYEL  480
IYKMDKVTYN KYHPYTSWIP ITWLGKITLE TYISQFHIWL RSDMPNGQPK WLLSLIPEYP  540
MLNFMLTTAI YLLISHRLFD LTNTLNYVWM VGISSGSGIL ITGNLITGNL IDSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-271862531077Probable WRKY transcription factor 4
2lex_A1e-271862531077Probable WRKY transcription factor 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.11e-52WRKY DNA-binding protein 28