PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn220311
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 265aa    MW: 27484.6 Da    PI: 4.9432
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn220311genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP38.44.5e-1211524384
         TCP 43 kdsktieWLlqqakpaikeltgtssssaseceaesssssasn 84
                +d++tieWLl q++pai+++tgt++++a++++ + s  s+++
  Achn220311 11 SDGETIEWLLHQSEPAIIAATGTGTIPANFSTLNGSIRSGGT 52
                79**************************99944444444442 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513698.667130IPR017887Transcription factor TCP subgroup
PfamPF036343.1E-111164IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MISTCLAPGR SDGETIEWLL HQSEPAIIAA TGTGTIPANF STLNGSIRSG GTTASAPPSK  60
SPVHGGGATV LGFTGGGLEE FSGEDFMKKR FKEDITPAAE PDRTGMLDRE PCSDPNPGSF  120
RQSFLPAPAM WAVGPATSNG GVEGFWMLPA ATALVGAGQP EHQMRPYKGT PVQRIGVFEF  180
PGSVRFSPVH LVPQAQPVQQ RGLGMSEPIG MGNLGSIRVN AYSGGGGGGG VKLGMNLEQH  240
HHENHQSEQP EASESADESP EDSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027094718.15e-69transcription factor TCP23-like
TrEMBLA0A2R6RP681e-129A0A2R6RP68_ACTCH; Transcription factor like
STRINGXP_009624724.12e-66(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.13e-26TCP family protein