PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn205001

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TCP

Protein Properties

Length: 358aa MW: 37828.9 Da PI: 7.5795

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn205001	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.3	1.3e-38	61	143	4	85
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++ ++s +ss+++ Achn205001 61 TKKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNVSIRSSGGTT 143 799****************************************************************9996555555555533 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.497	65	119	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.7E-35	65	159	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MKLMESRSNN HRRSTSSDSD HHTHNQQPAD SDLHLLRTGS GQTQPHAPFT TTDSAAANKI 60 TKKPSKDRHT KVDGRGRRIR MPAVCAARVF QLTRELGHKS DGETIEWLLH QAEPAIIAAT 120 GTGTIPANFS TLNVSIRSSG GTTVSAPPSK SPVHGCPGSM LGFPGNGFVE LSGQNFMKKR 180 FKESNTPAAE PDRTGVQYGD PGSDPKTGSF HPSFVPAPAM WAVAPSTENG GGNGFWMLPA 240 ATALVGARQP EHQMWPYKGT PVQRIGGFEF PGSGRFSPVQ LVPQAQPVQQ LGLGMSEISG 300 MGNLGSINVN ASSGSGGSGG GGRVELGMNL EQHHHENHQT EQPEASESGD ESPEVSH*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MKLMESRSNN HRRSTSSDSD HHTHNQQPAD SDLHLLRTGS GQTQPHAPFT TTDSAAANKI  60
TKKPSKDRHT KVDGRGRRIR MPAVCAARVF QLTRELGHKS DGETIEWLLH QAEPAIIAAT  120
GTGTIPANFS TLNVSIRSSG GTTVSAPPSK SPVHGCPGSM LGFPGNGFVE LSGQNFMKKR  180
FKESNTPAAE PDRTGVQYGD PGSDPKTGSF HPSFVPAPAM WAVAPSTENG GGNGFWMLPA  240
ATALVGARQP EHQMWPYKGT PVQRIGGFEF PGSGRFSPVQ LVPQAQPVQQ LGLGMSEISG  300
MGNLGSINVN ASSGSGGSGG GGRVELGMNL EQHHHENHQT EQPEASESGD ESPEVSH*

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027092108.1	1e-109	transcription factor TCP23-like
Swissprot	Q9C518	2e-62	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A2R6RP68	0.0	A0A2R6RP68_ACTCH; Transcription factor like
STRING	XP_009624724.1	1e-106	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	5e-58	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]