PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn193231
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 406aa    MW: 45698.9 Da    PI: 7.6727
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn193231genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP154.46.6e-48842323136
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssas...nsssg...... 88 
                 gkkdrhski T++g+RdRRvRls+e+a++fFdLqd LGfdk+skti+WLl+++k+aikel++t++s+  ec    e+e+++++++   +   +      
  Achn193231  84 GKKDRHSKIWTAQGPRDRRVRLSIEIARKFFDLQDILGFDKASKTIDWLLTKSKTAIKELVKTKQSNCGECeeeeEEEEEVVEVEveeE---Eeekegg 179
                 8**************************************************************77777788654333333333333321...2567789 PP

         TCP  89 ......kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                       k +   + +k +q++  +++ la+esra+ar rarertrekm++++ +
  Achn193231 180 vvskgmKPNV-MEGRKVKQQDRGAFHLLARESRARARTRARERTREKMCKRTIN 232
                 9998643333.3355666666666899***********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-4384228IPR005333Transcription factor, TCP
PROSITE profilePS5136936.18485143IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.055208225IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MTIKDDCLRI ADVHICGDIH SQSHPDLLEK DLLTVNSPVI DTIFGMSVSN KLPSNTNQET  60
NGVLISGNHS SDPHSVLIPS KKEGKKDRHS KIWTAQGPRD RRVRLSIEIA RKFFDLQDIL  120
GFDKASKTID WLLTKSKTAI KELVKTKQSN CGECEEEEEE EEEVVEVEVE EEEEEKEGGV  180
VSKGMKPNVM EGRKVKQQDR GAFHLLARES RARARTRARE RTREKMCKRT INDPKLSSSS  240
IQVEGCERSI RELKNKTLVV GCEGNGVISY SKASQELLSD IAEDSIVIKR RSKTSSIFNY  300
QQNPSKDETK LGEPCVKYLN QNIRSNPLNN SRLTQGFSSN IEKITDIYVE KIEVMVHSAI  360
HLLSNKQASG WQVILCNFTF SNCVNQLAIG QSVNVALLFI CYYIK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212224RARTRARERTREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6P9X01e-124A0A2R6P9X0_ACTCH; Transcription factor CYCLOIDEA like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.24e-28TCP family protein