PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn189151
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 292aa    MW: 32176.2 Da    PI: 8.447
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn189151genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.5e-18106155356
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  Achn189151 106 YRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 155
                 9******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.58E-16104164No hitNo description
SuperFamilySSF541712.16E-22105163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.6E-31105163IPR001471AP2/ERF domain
PROSITE profilePS5103223.248105162IPR001471AP2/ERF domain
SMARTSM003803.5E-35105168IPR001471AP2/ERF domain
PfamPF008471.2E-12105155IPR001471AP2/ERF domain
PRINTSPR003674.6E-10106117IPR001471AP2/ERF domain
PRINTSPR003674.6E-10128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MQENNNPFAF TGIAGNRSSL SDLILAGGTN TLDSIFSHCS PSIPVPNPVV LEPLGSSVYL  60
QQRDLLQKFS KENPSNTAIS QISLTSPLQN SLYTNSYLTQ HKKKIYRGVR QRHWGKWVAE  120
IRLPQNRMRV WLGTYETAEA AAYAYDRAAY KLRGEYARLN FPNLRDPTKL GFGDCTRLNA  180
LKSAVDAKIQ AICQKIKREK VNKSGKKIES SKEDSGKEIK VDSSSLGGSE SWSDQVQSSA  240
ISDDGLRKGE NSPASVSGEW LMTAESSELD CCSLAHMPSL DPELIWEVLA N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21104162160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-21102162263ATERF1
3gcc_A5e-21102162263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028115442.11e-116ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W23e-65ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A2R6QN450.0A0A2R6QN45_ACTCH; Ethylene-responsive transcription factor
STRINGXP_006476394.11e-110(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.19e-65ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]