PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn166631
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 326aa    MW: 36953 Da    PI: 8.6142
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn166631genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.31.9e-401062543135
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasnsssg... 88 
                  kkdrhski T++g+RdRR+Rls+e+a +fF Lqd+LGfdk+skt+ WLl+++k aike  +           +++sas++++++          +   
  Achn166631 106 SKKDRHSKIDTAQGPRDRRMRLSLEVAPQFFGLQDMLGFDKASKTVGWLLNKSKNAIKEVKKGlphmkhspsvGANSASSTSDGEGL--------Sgid 196
                 69**********************************************************999886655554422222222222222........1333 PP

         TCP  89 ...........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                            k+ +++a  k++++ +a   +  kesr+kar+rarert ek r++++
  Achn166631 197 estvevrtskgKKPSTSAGAKEKKTTKALRKSATKESREKARERARERTLEKRRLNDQ 254
                 44445666665555555555555555555688888*****************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-42106250IPR005333Transcription factor, TCP
PROSITE profilePS5136933.792107165IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.347231248IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MYPSNSNDNT TPISYPLDQT ITFKSSLYDD FTPNSTQDQD PHPSSMYCFP SPYIPYEDDI  60
VLRQHLNDLL LQQPPPLPPP QQAIENMDDS TKNQCPRVVE PRKRSSKKDR HSKIDTAQGP  120
RDRRMRLSLE VAPQFFGLQD MLGFDKASKT VGWLLNKSKN AIKEVKKGLP HMKHSPSVGA  180
NSASSTSDGE GLSGIDESTV EVRTSKGKKP STSAGAKEKK TTKALRKSAT KESREKARER  240
ARERTLEKRR LNDQSKPPFE AMSHDMNRFR SNWSSFENFD EPGAPSNFHV EELSSSIFNY  300
DQHNTEISQE HQFNEFQVYG KPWEA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028060129.13e-87transcription factor DICHOTOMA
TrEMBLA0A2R6PTY30.0A0A2R6PTY3_ACTCH; Transcription factor like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-21TCP domain protein 12