PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn133881

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TCP

Protein Properties

Length: 371aa MW: 40347.2 Da PI: 6.6798

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn133881	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.8	5.5e-36	35	140	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsssgkaaksaa 95 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++ +s++ ++s++s++ +s g ++++ Achn133881 35 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDKLppwkpTSDD----HTNSHESQQIRDSFGGTSSNTL 129 79**************************************************************654431111....2333333333334443333333 PP TCP 96 .kskksqksaa 105 ++ + q++++ Achn133881 130 lTGGDVQHQEQ 140 23333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.2E-32	35	134	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.273	37	95	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MEETYNHRQT PSRLGLRHAG GEIVEVEGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLAAH 60 TAIQFYDVQD RLGYDRPSKA VDWLIKKAKA AIDELDKLPP WKPTSDDHTN SHESQQIRDS 120 FGGTSSNTLL TGGDVQHQEQ LMEMTNAREN DSGGFLPASL DSDAIADTIK SFFPMGGASA 180 ETNSSSMQFQ NFPPPDFLSR TGGQRQQDLR LSLQSMDDQI LLHHHPHHQS PPQSQPLFSG 240 LGFDAAPSGG WWNTGGGDAA SGGGGGFIFN SPPTPTPFFG QNNQFVSQRG PLQSSNTPYV 300 RAWIDPCSIS AAADHHHHQS VPIHPSFSGI RFASVGGFSG FRIPTRLQGE EEEHDGISDK 360 PSSASSDSRH *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MEETYNHRQT PSRLGLRHAG GEIVEVEGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLAAH  60
TAIQFYDVQD RLGYDRPSKA VDWLIKKAKA AIDELDKLPP WKPTSDDHTN SHESQQIRDS  120
FGGTSSNTLL TGGDVQHQEQ LMEMTNAREN DSGGFLPASL DSDAIADTIK SFFPMGGASA  180
ETNSSSMQFQ NFPPPDFLSR TGGQRQQDLR LSLQSMDDQI LLHHHPHHQS PPQSQPLFSG  240
LGFDAAPSGG WWNTGGGDAA SGGGGGFIFN SPPTPTPFFG QNNQFVSQRG PLQSSNTPYV  300
RAWIDPCSIS AAADHHHHQS VPIHPSFSGI RFASVGGFSG FRIPTRLQGE EEEHDGISDK  360
PSSASSDSRH *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-20	42	95	1	54	Putative transcription factor PCF6
5zkt_B	3e-20	42	95	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.
UniProt	Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:18816164, ECO:0000269\|PubMed:25378179}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:18816164}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM468863	5e-70	AM468863.2 Vitis vinifera contig VV78X023076.3, whole genome shotgun sequence.
GenBank	FQ381831	5e-70	FQ381831.1 Vitis vinifera clone SS0ABG82YF20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028068857.1	1e-153	transcription factor TCP4-like
Swissprot	Q8LPR5	3e-95	TCP4_ARATH; Transcription factor TCP4
Swissprot	Q9MAH8	2e-95	TCP3_ARATH; Transcription factor TCP3
TrEMBL	A0A2R6PTG5	0.0	A0A2R6PTG5_ACTCH; Transcription factor like
STRING	XP_009630327.1	1e-128	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3207	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	1e-69	TCP family protein

Publications ? help Back to Top
Schommer C, et al. Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol., 2008. 6(9): p. e230 [PMID:18816164] Ju Y, et al. Arabidopsis JINGUBANG Is a Negative Regulator of Pollen Germination That Prevents Pollination in Moist Environments. Plant Cell, 2016. 28(9): p. 2131-2146 [PMID:27468890] Challa KR,Aggarwal P,Nath U Activation of YUCCA5 by the Transcription Factor TCP4 Integrates Developmental and Environmental Signals to Promote Hypocotyl Elongation in Arabidopsis. Plant Cell, 2016. 28(9): p. 2117-2130 [PMID:27597774] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Li J, et al. RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis. J. Exp. Bot., 2016. 67(22): p. 6473-6480 [PMID:27838638] Sun X, et al. Activation of secondary cell wall biosynthesis by miR319-targeted TCP4 transcription factor. Plant Biotechnol. J., 2017. 15(10): p. 1284-1294 [PMID:28233945] Kubota A, et al. TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis. PLoS Genet., 2017. 13(6): p. e1006856 [PMID:28628608] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Vadde BVL,Challa KR,Nath U The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana. Plant J., 2018. 93(2): p. 259-269 [PMID:29165850] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092] Challa KR,Rath M,Nath U The CIN-TCP transcription factors promote commitment to differentiation in Arabidopsis leaf pavement cells via both auxin-dependent and independent pathways. PLoS Genet., 2019. 15(2): p. e1007988 [PMID:30742619]