PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn132991

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WRKY

Protein Properties

Length: 311aa MW: 35039.6 Da PI: 7.766

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn132991	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.1	8.9e-34	173	230	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C vkk+vers +dp++v++tYeg+Hnh+ Achn132991 173 EDGYRWRKYGQKAVKNSPFPRSYYRCTSPKCGVKKRVERSYQDPSIVITTYEGQHNHH 230 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.9E-35	157	232	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-29	164	232	IPR003657	WRKY domain
PROSITE profile	PS50811	31.399	167	232	IPR003657	WRKY domain
SMART	SM00774	4.0E-39	172	231	IPR003657	WRKY domain
Pfam	PF03106	1.4E-26	173	230	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MGTGGHVFSF FRDINHPTNH EGLDPSPYTT FTESLHGSID RYNSNTLSTT AFDNMSCSSI 60 LSHGYDSRNS TTRYGHVADL LSENPLTPPH STSKSASSST DQQGAAHHQR DEFGKCREDD 120 HHHQKVCEEG AHDDDDVDRD QLNKVNKPKK KGEKRQRQPR FAFMTKSEIE NLEDGYRWRK 180 YGQKAVKNSP FPRSYYRCTS PKCGVKKRVE RSYQDPSIVI TTYEGQHNHH TPATLRGNAA 240 GFVFSPNYHN ALQLQASTAS SLGLSFPQQL LLAQNQMLTP TSSIQHLQLL PDHYGFLQDT 300 VPPFVYKQEP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-29	162	233	7	78	Probable WRKY transcription factor 4
2lex_A	1e-29	162	233	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018836807.1	1e-72	PREDICTED: probable WRKY transcription factor 28
Swissprot	Q8VWJ2	2e-46	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A2R6QCH7	0.0	A0A2R6QCH7_ACTCH; WRKY transcription factor 28
STRING	VIT_12s0028g00270.t01	1e-65	(Vitis vinifera)
STRING	POPTR_0002s06000.1	2e-65	(Populus trichocarpa)
STRING	XP_009766292.1	2e-65	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	5e-47	WRKY DNA-binding protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]