PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn122191
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 368aa    MW: 40771.9 Da    PI: 9.5788
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn122191genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP93.83.6e-2949124274
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...e 74 
                  g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl + k+ i++l+ ++ ++ +++   +
  Achn122191  49 FGGKDRHSKVCTMRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDATKHDIDKLPPLQMPPGNFSqfyQ 124
                 689*************************************************************999997774431 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.73551109IPR017887Transcription factor TCP subgroup
PfamPF036341.2E-2651120IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MIPNSREKDF EAKVEGDANN ISKFNKAPSS SRQWSALKNP RIVRVSRAFG GKDRHSKVCT  60
MRGLRDRRIR LSVPTAIQLY DLQDRLGLSQ PSKVVDWLLD ATKHDIDKLP PLQMPPGNFS  120
QFYQPSLVSP ELNAPQSSLA TFFNPNPEFV KEGGITQSLL PNKEGVEINY NLGNEQLMGK  180
PNAGMEGKLK EVERESTIVG KTKWMRANED RSYIPQVSAQ NFFPLSSNLS SFPYNYYHFD  240
PSGLSLSQFG PHGSFPPPQT EAANPGNFMS MPSSLAFPSA PQLILSPPVA TPSLFPSFPP  300
YIPNPGETDT RQINHFPFLS SSSHHGLQNP LMPSLHNSFS YSMSTSSKVH LHSQNDERQL  360
NKGNTGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1856110155Putative transcription factor PCF6
5zkt_B1e-1856110155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028059156.11e-152transcription factor TCP5-like isoform X2
TrEMBLA0A2R6PV280.0A0A2R6PV28_ACTCH; Transcription factor like
STRINGEOY220941e-107(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-51TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5