PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn110851

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TCP

Protein Properties

Length: 277aa MW: 29212.6 Da PI: 8.7536

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn110851	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.8	4.7e-39	61	145	4	88
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl q++pai+++tgt++++a++++ + s s+++ s+ Achn110851 61 TKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQSEPAIIAATGTGTIPANFSTLNGSIRSGGTTASA 145 799****************************************************************999555555444433332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.109	65	119	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.7E-35	65	150	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MKLMDSQSNN HQSSTSSGSD HHTHNQQPTN YDLHLLGPGS GQSQPHGPSN NTDSAAANKI 60 TKKPSKDRHT KVDGRGRRIR MPALCAARVF QLTRELGHKS DGETIEWLLH QSEPAIIAAT 120 GTGTIPANFS TLNGSIRSGG TTASAHPSKS PVHGGGATVL GFTGGGLEGF SGDDFMKKRF 180 KEDITPAAEP DRTGMLDREP CSDPNPGSLR PSFLPAPAMW AVGPATSNGG GEGFWMLPAA 240 TALVGAGQPE HQMWPYKGTP VQRIGVFEFP GSVRFI*

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022866453.1	3e-87	transcription factor TCP23-like
Swissprot	Q9C518	6e-53	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A2R6RP68	1e-155	A0A2R6RP68_ACTCH; Transcription factor like
STRING	XP_009624724.1	5e-85	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	1e-51	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]