PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn100281

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 765aa MW: 87802.8 Da PI: 4.9488

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn100281	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.5	1.7e-21	157	241	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn YAke GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++ +leHnH++ Achn100281 157 NYYNCYAKESGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAS-----SRRKETRTGCLAMIRLRLVESNRWRVDEAKLEHNHSFD 241 69**************************************98877.....8999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-19	157	241	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-28	360	451	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.854	646	682	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.3E-5	654	679	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.2E-6	657	684	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 765 aa Download sequence Send to blast
MTGDRGFSPI GGDLPPSPDL DITISEGSED SEQLFEEEGS EHEIDSEQMF AIESNDFEDG 60 SEQVLGIASN DLCSDSEQVL EFGSNDEGNN SKQVFGIESN KHENNSDQVL EIDSHYHGSS 120 RTCVTTNVCD HNGVSQGKGY PPPVVGMEFE SYDDAYNYYN CYAKESGFAI RVKSSWTKRN 180 SKEKRGAVLC CNCEGFKTIK EASSRRKETR TGCLAMIRLR LVESNRWRVD EAKLEHNHSF 240 DPERAQNSKS HKKMDAGVKR KLEPPPDVEV RTIKLYRTPV VDIVGYGSSS EKEMSNHVGQ 300 SRRLKLNNGD AQVINNYFCR VQLTNPNFFY VMDLNDDGLL RNVFWIDSRS RAAYGYFGDV 360 VALDTTCLSN QFEIPLLSFV GVNHHGQSIL LGCGLLADET LETYIWLLRA WLTCMLGRPP 420 QTIITDQCKA LQTAVAEIFP RAHHRLCLSN VIQSILRDFG EVEESEVFRT VLSRTVHNCI 480 KVDEFEVAWE NMIQRFGIRD HEWLRTLYED REQWAPVYSK DTFFAGMFTS QPGEITSPFF 540 DGYVHKQTTL KEFFDMYELV LQKKYQKESL DDFESKESRP MLKTSCPYEL PLSEMYTKEI 600 FLKFQEEVEM MASCLSVTQI HANGPIITYM VKEQEEDGDL RGIRNFEVMY DKAGVEVRCI 660 CSCFNFKGYL CRHALRVLNY NDVDEIPIQY VLSRWRKDFK RMYVPDLGSN SIDITNPVQW 720 FDHLYKRALQ VVEEGMTSQD HYMVAWQAFK ESLNKVRLVT DKHV*

Sequence ? help Back to Top

Protein Sequence Length: 765 aa Download sequence Send to blast

MTGDRGFSPI GGDLPPSPDL DITISEGSED SEQLFEEEGS EHEIDSEQMF AIESNDFEDG  60
SEQVLGIASN DLCSDSEQVL EFGSNDEGNN SKQVFGIESN KHENNSDQVL EIDSHYHGSS  120
RTCVTTNVCD HNGVSQGKGY PPPVVGMEFE SYDDAYNYYN CYAKESGFAI RVKSSWTKRN  180
SKEKRGAVLC CNCEGFKTIK EASSRRKETR TGCLAMIRLR LVESNRWRVD EAKLEHNHSF  240
DPERAQNSKS HKKMDAGVKR KLEPPPDVEV RTIKLYRTPV VDIVGYGSSS EKEMSNHVGQ  300
SRRLKLNNGD AQVINNYFCR VQLTNPNFFY VMDLNDDGLL RNVFWIDSRS RAAYGYFGDV  360
VALDTTCLSN QFEIPLLSFV GVNHHGQSIL LGCGLLADET LETYIWLLRA WLTCMLGRPP  420
QTIITDQCKA LQTAVAEIFP RAHHRLCLSN VIQSILRDFG EVEESEVFRT VLSRTVHNCI  480
KVDEFEVAWE NMIQRFGIRD HEWLRTLYED REQWAPVYSK DTFFAGMFTS QPGEITSPFF  540
DGYVHKQTTL KEFFDMYELV LQKKYQKESL DDFESKESRP MLKTSCPYEL PLSEMYTKEI  600
FLKFQEEVEM MASCLSVTQI HANGPIITYM VKEQEEDGDL RGIRNFEVMY DKAGVEVRCI  660
CSCFNFKGYL CRHALRVLNY NDVDEIPIQY VLSRWRKDFK RMYVPDLGSN SIDITNPVQW  720
FDHLYKRALQ VVEEGMTSQD HYMVAWQAFK ESLNKVRLVT DKHV*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028057606.1	0.0	protein FAR1-RELATED SEQUENCE 8 isoform X1
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A2R6QZL7	0.0	A0A2R6QZL7_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	EMJ18225	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]