PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn097861

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 668aa MW: 77022.6 Da PI: 8.3504

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn097861	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.5	1.4e-20	60	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y YAk++GF+vr+++s +++++e + + ++Cs +g+++ ++ + + r+etrtgC a++++++ ++++w+v ++ leHnH+l Achn097861 60 NYYICYAKDAGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----HIRKETRTGCPAMIRMRLVDSKRWRVLEVTLEHNHSL 143 5899*************************************9988.....8999*****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.1E-18	60	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-29	263	355	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.866	549	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.0E-6	560	587	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	3.4E-4	561	581	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MEEASLKNDQ TPISQGSDIP QERESERTGL DGQNGVPPER KEFVAPAVGM EFESYDDAYN 60 YYICYAKDAG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNHIRK ETRTGCPAMI 120 RMRLVDSKRW RVLEVTLEHN HSLGAKIYKS IKKMGTGARR KLQSNADADV RTIKLYRALV 180 IDAGGHGNSN SSAREITNLS DHPNQLNLKK SDTQAIYNYL CRMQLTNPNF FYLMDLSDEG 240 QVKNVFWADA RSRAAGGYFD DAIFFDNTYL SNKYEIPLEA FVGINHHGQL VLLGCGLLAG 300 ETTESYIWLL KAWMTCMSDR SPQTIITDRC KVLQSAIAEV FPRSLHRFGL SHIMRKVPEK 360 LGGLRNYDTI RKALTKAVYE ALKPFDFEAA WGFMIQHFGV SDHEWLQSLY EDRARWAPVY 420 LKDTFFSGMA SVRPGETLNA FFDRYVHKQT PLKEFLDKYE LALQKKHKEE ANADMESRNS 480 SPTLKTRCSF ELQLSKVYTR EIFKKFQFEV EEMYSCFSTT QLHIDGPIVI FLVKERVLGE 540 GNRREIRDYE VLYNRAAAEV RCICSCFNFN GYLCRHALCV LNFNGVEEIP SKYILSRWKK 600 DYKRLHIPDH GSGNVDVTDR VQWFSQLYRS ALQVVEEGVI SLDHYKVALQ AFEESLNRVH 660 DVEEKRE*

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MEEASLKNDQ TPISQGSDIP QERESERTGL DGQNGVPPER KEFVAPAVGM EFESYDDAYN  60
YYICYAKDAG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNHIRK ETRTGCPAMI  120
RMRLVDSKRW RVLEVTLEHN HSLGAKIYKS IKKMGTGARR KLQSNADADV RTIKLYRALV  180
IDAGGHGNSN SSAREITNLS DHPNQLNLKK SDTQAIYNYL CRMQLTNPNF FYLMDLSDEG  240
QVKNVFWADA RSRAAGGYFD DAIFFDNTYL SNKYEIPLEA FVGINHHGQL VLLGCGLLAG  300
ETTESYIWLL KAWMTCMSDR SPQTIITDRC KVLQSAIAEV FPRSLHRFGL SHIMRKVPEK  360
LGGLRNYDTI RKALTKAVYE ALKPFDFEAA WGFMIQHFGV SDHEWLQSLY EDRARWAPVY  420
LKDTFFSGMA SVRPGETLNA FFDRYVHKQT PLKEFLDKYE LALQKKHKEE ANADMESRNS  480
SPTLKTRCSF ELQLSKVYTR EIFKKFQFEV EEMYSCFSTT QLHIDGPIVI FLVKERVLGE  540
GNRREIRDYE VLYNRAAAEV RCICSCFNFN GYLCRHALCV LNFNGVEEIP SKYILSRWKK  600
DYKRLHIPDH GSGNVDVTDR VQWFSQLYRS ALQVVEEGVI SLDHYKVALQ AFEESLNRVH  660
DVEEKRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028116032.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2R6PSK4	0.0	A0A2R6PSK4_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	VIT_09s0002g07400.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]