PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn088511
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Whirly
Protein Properties Length: 276aa    MW: 30433.8 Da    PI: 8.0332
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn088511genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly67.52.5e-2124767112
      Whirly  67 dlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvt 112
                 +l+++esceffhdp++++s+eGkvrk+lkvePlpdG+G+f+nls +
  Achn088511   2 SLGPRESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGTGHFFNLSWH 47 
                 79*****************************************854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF544475.1E-17176IPR009044ssDNA-binding transcriptional regulator
Gene3DG3DSA:2.30.31.108.1E-15246IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.5E-16247IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSLGPRESCE FFHDPFKGKS EEGKVRKVLK VEPLPDGTGH FFNLSWHTFA SSIRPEDTSR  60
VNNANSRTGA DFEWSSRLMR PAEATTPEQT EGWIKELTQP PWEGRDKKQH KSHVSLDNRT  120
DNKSVAMSKR RKTPDRTKSG VDLYNTLNTK SNQTAQVAPT MRAGHRVSAE GRTGNGSSLG  180
LPRSSNSQTQ NCDADEWINE IPYYPCLLSN KTTTNGTGLA ESVGKEDPVE LDSKSELESM  240
HVPAAHLPTH SRGHLAPKAR VVGEARMVDE PCGQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A8e-27174108218p24: plant transcriptional regulator PBF-2
1l3a_B8e-27174108218p24: plant transcriptional regulator PBF-2
1l3a_C8e-27174108218p24: plant transcriptional regulator PBF-2
1l3a_D8e-27174108218p24: plant transcriptional regulator PBF-2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4792474e-36AF479247.1 Morella cerifera 26S ribosomal RNA gene, complete sequence.
GenBankHG9754464e-36HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.18e-35ssDNA-binding transcriptional regulator