PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA68G00038
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Trihelix
Protein Properties Length: 270aa    MW: 32916.3 Da    PI: 7.3502
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA68G00038genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.98.9e-2629111186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W  +e+++ i++r e+++++ ++k++k lWe vs+kmr+ gf rsp+qCk+kw+nl +r+k ++ +e++    +++++p++d+++
  AA68G00038  29 QWNVEETKEFIKIRGELDQTFMETKRNKLLWEVVSNKMRDIGFPRSPEQCKCKWKNLVTRFKGCEVMEEET---ARHQFPFYDDMQ 111
                 7********************************************************************84...4456******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0012688IPR001005SANT/Myb domain
CDDcd122033.84E-242893No hitNo description
PfamPF138374.2E-2029112No hitNo description
PROSITE profilePS500907.2483086IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDQEHQHHLS HLQYLNQQET GVSGDRFPQW NVEETKEFIK IRGELDQTFM ETKRNKLLWE  60
VVSNKMRDIG FPRSPEQCKC KWKNLVTRFK GCEVMEEETA RHQFPFYDDM QTIFTTRMQR  120
KVWAESEGSI RGLKKANSEH MSSDEEEEEL IDIKHDSKHV NSKKKSSLKK RKVINNGVGE  180
LLDEFMRQHM KMEKEWRERW EMREKEREEK EEEWRRKMET LEKERASMEE MWRSREEERR  240
AKEETRALKR DSLINVLLHK LNNDPFISPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A2e-1226107384DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA68G00038
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013752201.19e-99trihelix transcription factor GT-3b-like
SwissprotO804503e-88TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A078F0355e-98A0A078F035_BRANA; BnaA03g17660D protein
TrEMBLA0A397ZXI25e-98A0A397ZXI2_BRACM; Uncharacterized protein
STRINGBra000046.1-P7e-97(Brassica rapa)
STRINGBo4g029680.16e-97(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.16e-63Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]