PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA65G00297
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 240aa    MW: 27407.2 Da    PI: 8.3952
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA65G00297genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-1468120155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +r +h e+E++RR+++ s f +Lr++lP       ++K s ++ + +Av+YIk+Lq
  AA65G00297  68 KRLKHREIEKQRRREVTSLFKNLRSILPFqY---IKGKRSSSDHVFEAVNYIKDLQ 120
                 799**************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1564146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-1265124No hitNo description
PROSITE profilePS5088813.64367119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1268145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-1268120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-473125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDFASSSLFT SDFSNENALD FSSLITPSSF LSFQESISCI PITLTNVEND KNRKSYDKIA  60
VDEERKNKRL KHREIEKQRR REVTSLFKNL RSILPFQYIK GKRSSSDHVF EAVNYIKDLQ  120
NNIKTLEKTR NQIKRSITYV KPSLSSSSPS SLSSSTNCSC IGDTHIDVVI KPCLVGIEII  180
TSCCFRHNLS SVLEFLAQEQ CFEIVSCIST KLHQRFMHTI VSKVDDGTTI NYLELQEKIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA65G00297
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417224.12e-93transcription factor bHLH55
SwissprotQ9LN953e-91BH055_ARATH; Transcription factor bHLH55
TrEMBLV4KZW85e-92V4KZW8_EUTSA; Uncharacterized protein
STRINGXP_006417224.18e-93(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.14e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]